Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : RYS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N3 N N1 N N N 0 2.303 0.816 0.786
2 C4 C C1 N N N 0 -2.52 -2.069 0.36
3 N2 N N2 N Y N 0 0.409 -0.387 0.115
4 C7 C C2 N Y N 0 -1.682 0.671 -0.225
5 C6 C C3 N Y N 0 -0.869 -0.476 -0.216
6 C9 C C4 N Y N 0 0.211 1.947 0.458
7 C13 C C5 S N N 0 4.534 1.151 -0.024
8 C8 C C6 N Y N 0 -1.116 1.906 0.123
9 C16 C C7 N N N 0 -3.065 0.58 -0.584
10 C1 C C8 N N N 0 -1.033 -5.153 -0.999
11 C2 C C9 S N N 0 -1.156 -4.045 0.049
12 C3 C C10 N N N 0 -2.631 -3.605 0.194
13 N1 N N3 N N N 0 -1.409 -1.704 -0.555
14 C5 C C11 N N N 0 -0.403 -2.78 -0.418
15 C10 C C12 N Y N 0 0.96 0.772 0.446
16 C11 C C13 N N N 0 2.916 -0.535 0.711
17 C12 C C14 R N N 0 4.43 -0.268 0.572
18 C14 C C15 N N N 0 3.074 1.622 -0.196
19 O1 O O1 N N N 0 5.195 1.109 -1.291
20 O2 O O2 N N N 0 5.023 -1.223 -0.311
21 C15 C C16 N N N 0 -1.95 3.161 0.128
22 F1 F F1 N N N 0 -1.155 4.248 0.508
23 O3 O O3 N N N 0 -0.643 -4.492 1.305
24 F2 F F2 N N N 0 -2.463 3.385 -1.155
25 F3 F F3 N N N 0 -3.006 3.016 1.034
26 N4 N N4 N N N 0 -4.162 0.508 -0.869
27 H1 H H1 N N N 0 -3.446 -1.581 0.054
28 H2 H H2 N N N 0 -2.272 -1.81 1.389
29 H3 H H3 N N N 0 0.674 2.884 0.731
30 H4 H H4 N N N 0 5.069 1.81 0.66
31 H5 H H5 N N N 0 0.019 -5.399 -1.146
32 H6 H H6 N N N 0 -1.569 -6.038 -0.656
33 H7 H H7 N N N 0 -1.461 -4.812 -1.941
34 H8 H H8 N N N 0 -3.082 -4.057 1.078
35 H9 H H9 N N N 0 -3.199 -3.857 -0.701
36 H10 H H10 N N N 0 0.344 -2.499 0.323
37 H11 H H11 N N N 0 0.075 -2.967 -1.38
38 H12 H H12 N N N 0 2.71 -1.097 1.622
39 H13 H H13 N N N 0 2.543 -1.073 -0.161
40 H14 H H14 N N N 0 4.912 -0.305 1.549
41 H15 H H15 N N N 0 2.727 1.421 -1.209
42 H16 H H16 N N N 0 2.988 2.684 0.033
43 H17 H H17 N N N 0 5.27 1.971 -1.723
44 H18 H H18 N N N 0 4.948 -2.138 -0.009
45 H19 H H19 N N N 0 -1.092 -5.272 1.659