Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RZ0

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 S S S N N N 0 -4.061 -0.457 -0.088
2 N' N N' N N N 0 2.698 0.119 -0.005
3 O' O O' N N N 0 2.068 2.248 0.04
4 C1 C C1 N Y N 0 0.32 0.698 -0.021
5 C2 C C2 N Y N 0 -1.385 -0.992 -0.073
6 C3 C C3 N Y N 0 -0.05 -0.647 -0.054
7 C4 C C4 N Y N 0 -2.358 -0.008 -0.062
8 C5 C C5 N Y N 0 -0.666 1.686 -0.009
9 C6 C C6 N Y N 0 -1.998 1.328 -0.03
10 C7 C C7 N N N 0 1.749 1.075 0.007
11 C1' C C1' N N N 0 4.115 0.492 0.023
12 O1S O O1S N N N 0 -4.763 0.66 -0.615
13 C2' C C2' N N N 0 4.976 -0.772 0.003
14 O2S O O2S N N N 0 -4.125 -1.756 -0.661
15 C3' C C3' N N N 0 6.455 -0.382 0.032
16 N3S N N3S N N N 0 -4.55 -0.616 1.487
17 C4' C C4' N N N 0 7.317 -1.646 0.012
18 HN' H HN' N N N 0 2.444 -0.817 -0.031
19 H2 H H2 N N N 0 -1.673 -2.033 -0.098
20 H3 H H3 N N N 0 0.708 -1.416 -0.063
21 H5 H H5 N N N 0 -0.387 2.729 0.016
22 H6 H H6 N N N 0 -2.762 2.091 -0.022
23 H2'A H H2'A N N N 0 4.768 -1.339 -0.904
24 H1' H H1' N N N 0 4.346 1.104 -0.849
25 H1'A H H1'A N N N 0 4.323 1.06 0.93
26 H2' H H2' N N N 0 4.745 -1.383 0.875
27 HN3S H HN3S N N N 0 -3.92 -0.463 2.208
28 HN3A H HN3A N N N 0 -5.467 -0.862 1.687
29 H4' H H4' N N N 0 8.37 -1.368 0.032
30 H4'A H H4'A N N N 0 7.085 -2.258 0.884
31 H14 H H14 N N N 0 7.108 -2.214 -0.895
32 H16 H H16 N N N 0 6.664 0.185 0.939
33 H3' H H3' N N N 0 6.687 0.229 -0.84