Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SI8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CU1 CU CU1 N N N 0 24.358 25.285 -17.656
2 N6 N N1 N Y N 0 22.918 26.18 -18.682
3 C23 C C1 N Y N 0 22.823 25.98 -20.086
4 C24 C C2 N Y N 0 21.814 26.614 -20.806
5 C25 C C3 N Y N 0 20.899 27.445 -20.153
6 C26 C C4 N Y N 0 20.984 27.659 -18.773
7 C22 C C5 N Y N 0 21.99 27.039 -18.026
8 C21 C C6 N N N 0 22.07 27.245 -16.529
9 C20 C C7 N N N 0 23.492 27.001 -16.043
10 N4 N N2 N N N 0 23.727 25.58 -15.774
11 N5 N N3 N Y N 0 26.049 24.381 -17.114
12 C16 C C8 N Y N 0 26.679 23.451 -17.987
13 C17 C C9 N Y N 0 27.865 22.823 -17.594
14 C18 C C10 N Y N 0 28.436 23.104 -16.346
15 C19 C C11 N Y N 0 27.828 24.015 -15.48
16 C15 C C12 N Y N 0 26.648 24.662 -15.854
17 C14 C C13 N N N 0 25.99 25.625 -14.917
18 C13 C C14 N N N 0 24.527 25.459 -14.585
19 C12 C C15 N N N 0 22.474 24.847 -15.593
20 C11 C C16 N N N 0 22.028 24.842 -14.123
21 N3 N N4 N N N 0 20.857 24.01 -13.96
22 C10 C C17 N N N 0 19.718 24.726 -14.18
23 O2 O O1 N N N 0 19.746 25.89 -14.937
24 C9 C C18 N N N 0 18.387 24.191 -13.677
25 C8 C C19 N N N 0 17.553 25.336 -13.09
26 C4 C C23 S N N 0 17.438 28.984 -9.694
27 C7 C C20 N N N 0 18.251 25.928 -11.861
28 C6 C C21 N N N 0 17.382 27.027 -11.251
29 C5 C C22 S N N 0 18.111 27.672 -10.061
30 N2 N N5 N N N 0 15.985 29.064 -9.689
31 S1 S S1 N N N 0 17.885 26.688 -8.571
32 C3 C C24 N N N 0 18.612 28.061 -7.679
33 C2 C C25 R N N 0 17.74 29.224 -8.138
34 N1 N N6 N N N 0 16.447 29.415 -7.54
35 C1 C C26 N N N 0 15.509 29.326 -8.477
36 O1 O O2 N N N 0 14.176 29.36 -8.202
37 O3 O O3 N N N 0 23.618 23.6 -18.252
38 O4 O O4 N N N 0 22.308 22.79 -18.355
39 H1 H H1 N N N 0 23.53 25.339 -20.592
40 H2 H H2 N N N 0 21.738 26.463 -21.873
41 H3 H H3 N N N 0 20.117 27.928 -20.721
42 H4 H H4 N N N 0 20.27 28.305 -18.283
43 H5 H H5 N N N 0 21.775 28.277 -16.287
44 H6 H H6 N N N 0 21.389 26.542 -16.028
45 H7 H H7 N N N 0 24.198 27.341 -16.815
46 H8 H H8 N N N 0 23.657 27.573 -15.118
47 H9 H H9 N N N 0 26.243 23.231 -18.95
48 H10 H H10 N N N 0 28.344 22.117 -18.257
49 H11 H H11 N N N 0 29.352 22.613 -16.052
50 H12 H H12 N N N 0 28.272 24.22 -14.517
51 H13 H H13 N N N 0 26.541 25.573 -13.967
52 H14 H H14 N N N 0 26.107 26.627 -15.355
53 H15 H H15 N N N 0 24.228 26.236 -13.866
54 H16 H H16 N N N 0 24.367 24.466 -14.14
55 H17 H H17 N N N 0 21.691 25.323 -16.202
56 H18 H H18 N N N 0 22.617 23.808 -15.926
57 H19 H H19 N N N 0 22.843 24.449 -13.497
58 H20 H H20 N N N 0 21.79 25.87 -13.812
59 H21 H H21 N N N 0 20.879 23.04 -13.718
60 H22 H H22 N N N 0 17.839 23.732 -14.513
61 H23 H H23 N N N 0 18.568 23.435 -12.898
62 H24 H H24 N N N 0 17.429 26.121 -13.85
63 H25 H H25 N N N 0 16.565 24.951 -12.796
64 H29 H H29 N N N 0 16.433 26.591 -10.905
65 H26 H H26 N N N 0 18.413 25.135 -11.116
66 H27 H H27 N N N 0 19.22 26.353 -12.161
67 H28 H H28 N N N 0 17.177 27.794 -12.012
68 H30 H H30 N N N 0 19.188 27.79 -10.248
69 H32 H H32 N N N 0 15.414 28.937 -10.5
70 H31 H H31 N N N 0 17.876 29.809 -10.275
71 H33 H H33 N N N 0 18.544 27.914 -6.591
72 H34 H H34 N N N 0 19.664 28.212 -7.963
73 H35 H H35 N N N 0 18.325 30.152 -8.054
74 H36 H H36 N N N 0 16.279 29.588 -6.569
75 H37 H H37 N N N 0 22.486 21.948 -18.758