Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SJY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 3.658 0.701 0.018
2 C13 C C2 N Y N 0 6.122 0.237 0.135
3 C15 C C3 N Y N 0 -1.179 -0.279 0.396
4 C17 C C4 N N N 0 -0.607 -2.548 -0.367
5 C20 C C5 N Y N 0 -2.554 0.199 0.26
6 C21 C C6 N Y N 0 -3.809 -0.378 0.462
7 C01 C C7 N N N 0 -6.294 -0.262 0.458
8 C02 C C8 N Y N 0 -4.939 0.36 0.24
9 C03 C C9 N Y N 0 -4.845 1.677 -0.185
10 C04 C C10 N Y N 0 -3.613 2.265 -0.391
11 C05 C C11 N Y N 0 -2.453 1.535 -0.171
12 O06 O O1 N Y N 0 -1.142 1.83 -0.283
13 C07 C C12 N Y N 0 -0.38 0.768 0.049
14 C08 C C13 N N N 0 1.052 0.744 0.038
15 C09 C C14 N N N 0 2.226 0.725 0.029
16 C11 C C15 N Y N 0 4.462 1.748 -0.33
17 C12 C C16 N Y N 0 5.81 1.477 -0.26
18 S14 S S1 N Y N 0 4.656 -0.679 0.456
19 C16 C C17 N N N 0 -0.735 -1.65 0.837
20 O18 O O2 N N N 0 -0.851 -2.119 -1.469
21 O19 O O3 N N N 0 -0.222 -3.825 -0.213
22 H1 H H1 N N N 0 7.127 -0.143 0.244
23 H2 H H2 N N N 0 -3.888 -1.404 0.793
24 H3 H H3 N N N 0 -6.608 -0.097 1.488
25 H4 H H4 N N N 0 -7.016 0.195 -0.219
26 H5 H H5 N N N 0 -6.239 -1.332 0.262
27 H6 H H6 N N N 0 -5.745 2.249 -0.356
28 H7 H H7 N N N 0 -3.553 3.291 -0.722
29 H9 H H9 N N N 0 6.562 2.211 -0.51
30 H8 H H8 N N N 0 4.074 2.709 -0.634
31 H10 H H10 N N N 0 0.23 -1.576 1.339
32 H11 H H11 N N N 0 -1.471 -2.067 1.524
33 H12 H H12 N N N 0 -0.154 -4.362 -1.015