Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : SP5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAB C CAB N N N 0 8.749 -0.83 0.008
2 CAC C CAC N N N 0 7.533 0.06 0.0
3 OAA O OAA N N N 0 7.663 1.265 -0.011
4 NAD N NAD N N N 0 6.3 -0.485 0.006
5 CAE C CAE N N N 0 5.117 0.38 -0.002
6 CAF C CAF N N N 0 3.854 -0.484 0.007
7 CAG C CAG N N N 0 2.619 0.419 -0.002
8 NAH N NAH N N N 0 1.406 -0.41 0.007
9 CAI C CAI N N N 0 0.198 0.425 -0.001
10 CAJ C CAJ N N N 0 -1.042 -0.472 0.008
11 CAK C CAK N N N 0 -2.301 0.398 0.0
12 CAL C CAL N N N 0 -3.54 -0.499 0.009
13 NAM N NAM N N N 0 -4.749 0.336 0.002
14 CAN C CAN N N N 0 -5.961 -0.493 0.01
15 CAO C CAO N N N 0 -7.196 0.41 0.002
16 CAP C CAP N N N 0 -8.46 -0.454 0.01
17 NAQ N NAQ N N N 0 -9.645 0.413 0.002
18 HAB H HAB N N N 0 9.043 -1.034 1.038
19 HABA H HABA N N N 0 8.517 -1.767 -0.497
20 HABB H HABB N N N 0 9.568 -0.331 -0.511
21 HNAD H HNAD N N N 0 6.196 -1.449 0.015
22 HAE H HAE N N N 0 5.127 1.017 0.882
23 HAEA H HAEA N N N 0 5.127 1.0 -0.898
24 HAF H HAF N N N 0 3.844 -1.122 -0.877
25 HAFA H HAFA N N N 0 3.845 -1.105 0.902
26 HAG H HAG N N N 0 2.629 1.057 0.882
27 HAGA H HAGA N N N 0 2.629 1.04 -0.898
28 HNAH H HNAH N N N 0 1.405 -1.056 -0.769
29 HAI H HAI N N N 0 0.191 1.063 0.883
30 HAIA H HAIA N N N 0 0.191 1.046 -0.897
31 HAJ H HAJ N N N 0 -1.035 -1.11 -0.876
32 HAJA H HAJA N N N 0 -1.035 -1.092 0.904
33 HAK H HAK N N N 0 -2.307 1.036 0.884
34 HAKA H HAKA N N N 0 -2.308 1.019 -0.896
35 HAL H HAL N N N 0 -3.533 -1.137 -0.875
36 HALA H HALA N N N 0 -3.533 -1.12 0.905
37 HNAM H HNAM N N N 0 -4.747 0.982 0.777
38 HAN H HAN N N N 0 -5.972 -1.131 -0.874
39 HANA H HANA N N N 0 -5.971 -1.114 0.906
40 HAO H HAO N N N 0 -7.186 1.048 0.886
41 HAOA H HAOA N N N 0 -7.187 1.031 -0.894
42 HAP H HAP N N N 0 -8.47 -1.091 -0.874
43 HAPA H HAPA N N N 0 -8.469 -1.074 0.906
44 HNAQ H HNAQ N N N 0 -9.627 1.044 -0.785
45 HNAA H HNAA N N N 0 -10.493 -0.134 0.008