Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SVD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.394 -1.092 0.098
2 C4 C C1 R N N 0 0.667 -0.309 0.773
3 C5 C C2 N N N 0 -0.116 0.932 1.265
4 C6 C C3 N N N 0 -1.293 0.969 0.307
5 C7 C C4 N N N 0 -2.347 -0.541 -1.349
6 N N N2 N N N 0 -1.354 -0.219 -0.322
7 C C C5 N N N 0 1.152 0.916 -1.349
8 O O O1 N N N 0 -2.046 1.905 0.138
9 C1 C C6 N N N 0 1.764 0.092 -0.215
10 C2 C C7 N N N 0 2.822 0.928 0.508
11 C3 C C8 N N N 0 2.415 -1.166 -0.793
12 O1 O O2 N N N 0 -0.957 -2.098 0.998
13 H1 H H1 N N N 0 1.086 -0.864 1.613
14 H2 H H2 N N N 0 -0.456 0.795 2.291
15 H3 H H3 N N N 0 0.488 1.834 1.172
16 H4 H H4 N N N 0 -3.23 -0.973 -0.878
17 H5 H H5 N N N 0 -2.627 0.368 -1.882
18 H6 H H6 N N N 0 -1.923 -1.259 -2.052
19 H7 H H7 N N N 0 0.688 1.813 -0.938
20 H8 H H8 N N N 0 1.933 1.202 -2.054
21 H9 H H9 N N N 0 0.398 0.321 -1.865
22 H10 H H10 N N N 0 2.358 1.824 0.92
23 H11 H H11 N N N 0 3.258 0.34 1.317
24 H12 H H12 N N N 0 3.603 1.214 -0.196
25 H13 H H13 N N N 0 3.197 -0.88 -1.497
26 H14 H H14 N N N 0 2.852 -1.753 0.015
27 H15 H H15 N N N 0 1.662 -1.761 -1.309
28 H16 H H16 N N N 0 -1.658 -2.633 0.601