Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T2S

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OP3 O O3P N N Y 0 -4.058 -2.262 4.783
2 P P P S N N 0 -4.096 -1.131 3.606
3 S1P S S1P N N N 0 -4.869 0.537 4.277
4 S2P S S2P N N N 0 -5.0 -2.081 1.942
5 O5' O O5* N N N 0 -2.493 -1.028 3.315
6 C5' C C5* N N N 0 -2.005 -0.136 2.327
7 C4' C C4* R N N 0 -0.611 0.328 2.728
8 O4' O O4* N N N 0 0.247 -0.829 2.764
9 C3' C C3* S N N 0 0.008 1.286 1.72
10 O3' O O3* N N N 0 0.965 2.121 2.368
11 C2' C C2* N N N 0 0.71 0.36 0.754
12 C1' C C1* R N N 0 1.157 -0.778 1.657
13 N1 N N1 N N N 0 1.164 -2.047 0.989
14 C2 C C2 N N N 0 2.333 -2.544 0.374
15 O2 O O2 N N N 0 3.41 -1.945 0.363
16 N3 N N3 N N N 0 2.194 -3.793 -0.24
17 C4 C C4 N N N 0 1.047 -4.57 -0.3
18 O4 O O4 N N N 0 0.995 -5.663 -0.857
19 C5 C C5 N N N 0 -0.143 -3.98 0.369
20 C5M C C5M N N N 0 -1.42 -4.757 0.347
21 C6 C C6 N N N 0 -0.013 -2.784 0.958
22 HOP3 H 3HOP N N N 0 -3.741 -1.998 5.673
23 HOP2 H 2HOP N N N 0 -5.372 -3.212 2.558
24 H5' H 1H5* N N N 0 -1.971 -0.654 1.366
25 H5'' H 2H5* N N N 0 -2.683 0.718 2.254
26 H4' H H4* N N N 0 -0.644 0.753 3.736
27 H3' H H3* N N N 0 -0.722 1.941 1.236
28 HO3' H H3T N N Y 0 0.743 3.042 2.146
29 H2' H 1H2* N N N 0 -0.003 -0.001 0.003
30 H2'' H 2H2* N N N 0 1.556 0.818 0.232
31 H1' H H1* N N N 0 2.163 -0.604 2.054
32 H3 H H3 N N N 0 3.023 -4.171 -0.689
33 H71 H 1H5M N N N 0 -1.735 -4.916 -0.683
34 H72 H 2H5M N N N 0 -2.195 -4.208 0.881
35 H73 H 3H5M N N N 0 -1.272 -5.721 0.833
36 H6 H H6 N N N 0 -0.857 -2.318 1.458