Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T3P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -1.04 -0.03 -3.573
2 OP1 O O1P N N N 0 -0.25 1.195 -3.822
3 OP2 O O2P N N N 0 -1.427 -0.713 -4.979
4 OP3 O O3P N N Y 0 -2.385 0.35 -2.774
5 O5' O O5* N N N 0 3.742 0.759 -1.645
6 C5' C C5* N N N 0 2.336 0.786 -1.9
7 C4' C C4* R N N 0 1.669 -0.404 -1.209
8 O4' O O4* N N N 0 1.769 -0.284 0.228
9 C3' C C3* S N N 0 0.141 -0.4 -1.469
10 O3' O O3* N N N 0 -0.168 -1.062 -2.697
11 C2' C C2* N N N 0 -0.395 -1.203 -0.259
12 C1' C C1* R N N 0 0.731 -1.105 0.788
13 N1 N N1 N N N 0 0.218 -0.491 2.015
14 C2 C C2 N N N 0 -0.299 0.749 1.973
15 O2 O O2 N N N 0 -0.335 1.348 0.916
16 N3 N N3 N N N 0 -0.777 1.337 3.085
17 C4 C C4 N N N 0 -0.748 0.685 4.265
18 O4 O O4 N N N 0 -1.181 1.216 5.272
19 C5 C C5 N N N 0 -0.202 -0.619 4.324
20 C5M C C5M N N N 0 -0.154 -1.368 5.631
21 C6 C C6 N N N 0 0.27 -1.185 3.193
22 HOP2 H 2HOP N N N 0 -1.947 -0.064 -5.472
23 HOP3 H 3HOP N N N 0 -2.869 -0.474 -2.632
24 H5' H H5* N N N 0 4.123 1.524 -2.097
25 H5'1 H 1H5* N N N 0 2.161 0.727 -2.974
26 H5'' H 2H5* N N N 0 1.915 1.714 -1.513
27 H4' H H4* N N N 0 2.114 -1.34 -1.546
28 H3' H H3* N N N 0 -0.25 0.616 -1.467
29 H2' H 1H2* N N N 0 -0.568 -2.242 -0.536
30 H2'' H 2H2* N N N 0 -1.31 -0.751 0.122
31 H1' H H1* N N N 0 1.121 -2.099 1.006
32 H3 H H3 N N N 0 -1.147 2.233 3.038
33 H51 H 1H5 N N N 0 -0.579 -0.749 6.421
34 H52 H 2H5 N N N 0 -0.729 -2.29 5.543
35 H53 H 3H5 N N N 0 0.88 -1.608 5.874
36 H6 H H6 N N N 0 0.687 -2.181 3.218