Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T5X

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 70


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2A O O2A N N N 0 -4.744 -2.721 -1.455
2 PA P PA R N N 0 -5.304 -1.671 -0.37
3 O1A O O1A N N N 0 -5.644 -0.399 -1.044
4 O3A O O3A N N N 0 -6.622 -2.276 0.331
5 PB P PB N N N 0 -8.15 -2.468 -0.138
6 O3B O O3B N N N 0 -8.901 -1.045 -0.116
7 O2B O O2B N N N 0 -8.179 -3.02 -1.511
8 O1B O O1B N N N 0 -8.895 -3.484 0.864
9 O7 O O7 N N N 0 -4.177 -1.402 0.748
10 C7 C C7 N N N 0 -2.929 -0.77 0.458
11 C6 C C6 N N N 0 -2.098 -0.671 1.739
12 C5 C C5 N Y N 0 -0.781 -0.005 1.433
13 S1 S S1 N Y N 0 0.702 -0.818 0.938
14 C2 C C2 N Y N 0 1.509 0.687 0.856
15 CX2 C CX2 S N N 0 2.954 0.87 0.467
16 CX3 C CX3 S N N 0 3.618 -0.499 0.312
17 CX4 C CX4 R N N 0 5.113 -0.313 0.045
18 CX5 C CX5 N N N 0 5.8 -1.68 0.021
19 OX5 O OX5 N N N 0 7.212 -1.501 -0.113
20 PX P PX N N N 0 8.25 -2.73 -0.173
21 OX7 O OX7 N N N 0 8.064 -3.591 1.016
22 OX6 O OX6 N N N 0 7.985 -3.592 -1.507
23 OX8 O OX8 N N N 0 9.756 -2.16 -0.192
24 OX4 O OX4 N N N 0 5.295 0.334 -1.216
25 OX3 O OX3 N N N 0 3.022 -1.197 -0.783
26 CX1 C CX1 N N N 0 3.032 1.628 -0.859
27 OX1 O OX1 N N N 0 2.308 0.912 -1.861
28 OX2 O OX2 N N N 0 3.629 1.615 1.482
29 N3 N N3 N Y N 1 0.703 1.642 1.175
30 C4 C C4 N Y N 0 -0.534 1.307 1.484
31 CM4 C CM4 N N N 0 -1.581 2.32 1.867
32 C7, C C7, N N N 0 1.142 3.04 1.187
33 C5, C C5, N Y N 0 0.298 3.839 0.227
34 C2, C C2, N Y N 0 -1.201 5.261 -1.479
35 C4, C C4, N Y N 0 -0.632 4.769 0.695
36 N4, N N4, N N N 0 -0.798 4.976 2.055
37 N3, N N3, N Y N 0 -1.356 5.455 -0.185
38 CM2 C CM2 N N N 0 -2.04 6.057 -2.445
39 N1, N N1, N Y N 0 -0.331 4.391 -1.952
40 C6, C C6, N Y N 0 0.43 3.674 -1.138
41 HO2A H HO2A N N N 0 -4.501 -3.579 -1.082
42 HO3B H HO3B N N N 0 -8.921 -0.624 0.754
43 HO1B H HO1B N N N 0 -9.822 -3.647 0.641
44 H71 H 1H7 N N N 0 -2.387 -1.359 -0.282
45 H72 H 2H7 N N N 0 -3.111 0.23 0.064
46 H61 H 1H6 N N N 0 -2.64 -0.082 2.479
47 H62 H 2H6 N N N 0 -1.916 -1.671 2.133
48 HX3 H HX3 N N N 0 3.481 -1.075 1.227
49 HX4 H HX4 N N N 0 5.55 0.299 0.834
50 HX51 H 1HX5 N N N 0 5.588 -2.21 0.949
51 HX52 H 2HX5 N N N 0 5.427 -2.26 -0.823
52 HOX6 H HOX6 N N N 0 8.089 -3.09 -2.326
53 HOX8 H HOX8 N N N 0 10.436 -2.847 -0.228
54 HOX4 H HOX4 N N N 0 4.93 -0.156 -1.966
55 HOX3 H HOX3 N N N 0 3.22 -0.813 -1.648
56 HX11 H 1HX1 N N N 0 2.598 2.621 -0.737
57 HX12 H 2HX1 N N N 0 4.075 1.723 -1.163
58 HOX1 H HOX1 N N N 0 2.315 1.335 -2.73
59 HOX2 H HOX2 N N N 0 3.619 1.193 2.352
60 HM41 H 1HM4 N N N 0 -1.464 2.584 2.918
61 HM42 H 2HM4 N N N 0 -1.464 3.214 1.254
62 HM43 H 3HM4 N N N 0 -2.572 1.896 1.707
63 H7,1 H 1H7, N N N 0 1.032 3.447 2.192
64 H7,2 H 2H7, N N N 0 2.187 3.095 0.884
65 H4,1 H 1H4, N N N 0 -0.175 4.581 2.685
66 H4,2 H 2H4, N N N 0 -1.536 5.515 2.377
67 HM21 H 1HM2 N N N 0 -1.522 6.981 -2.701
68 HM22 H 2HM2 N N N 0 -2.207 5.472 -3.349
69 HM23 H 3HM2 N N N 0 -2.999 6.294 -1.983
70 H6, H H6, N N N 0 1.14 2.964 -1.537