Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TAP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 76


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P AP R N N 0 -0.318 -1.061 0.687
2 O1A O AO1 N N N 0 0.196 -0.446 1.931
3 O2A O AO2 N N N 0 -1.026 -2.465 1.036
4 O5B O AO5* N N N 0 -1.391 -0.074 0.004
5 C5B C AC5* N N N 0 -2.384 0.205 0.993
6 C4B C AC4* R N N 0 -3.439 1.144 0.405
7 O4B O AO4* N N N 0 -4.171 0.469 -0.632
8 C3B C AC3* R N N 0 -4.45 1.545 1.497
9 O3B O AO3* N N N 0 -4.454 2.962 1.688
10 C2B C AC2* R N N 0 -5.816 1.069 0.938
11 O2B O AO2* N N N 0 -6.837 2.036 1.196
12 C1B C AC1* R N N 0 -5.527 0.963 -0.581
13 N9A N AN9 N Y N 0 -6.445 0.017 -1.22
14 C8A C AC8 N Y N 0 -6.237 -1.32 -1.389
15 N7A N AN7 N Y N 0 -7.257 -1.856 -1.993
16 C5A C AC5 N Y N 0 -8.182 -0.9 -2.25
17 C6A C AC6 N Y N 0 -9.446 -0.887 -2.863
18 N6A N AN6 N N N 0 -10.0 -2.051 -3.367
19 N1A N AN1 N Y N 0 -10.098 0.268 -2.947
20 C2A C AC2 N Y N 0 -9.578 1.383 -2.468
21 N3A N AN3 N Y N 0 -8.397 1.419 -1.887
22 C4A C AC4 N Y N 0 -7.674 0.312 -1.752
23 O3 O O3 N N N 0 0.903 -1.315 -0.331
24 PN P NP N N N 0 2.101 -1.959 0.53
25 O1N O NO1 N N N 0 1.835 -3.467 0.734
26 O2N O NO2 N N N -1 2.181 -1.26 1.905
27 O5D O NO5* N N N 0 3.493 -1.761 -0.255
28 C5D C NC5* N N N 0 4.525 -2.244 0.607
29 C4D C NC4* R N N 0 5.881 -2.083 -0.082
30 O4D O NO4* N N N 0 6.199 -0.684 -0.247
31 C3D C NC3* S N N 0 7.011 -2.642 0.811
32 O3D O NO3* N N N 0 7.363 -3.966 0.404
33 C2D C NC2* R N N 0 8.191 -1.67 0.578
34 O2D O NO2* N N N 0 9.309 -2.364 0.021
35 C1D C NC1* R N N 0 7.632 -0.638 -0.427
36 N1N N NN1 N Y N 1 8.141 0.701 -0.12
37 C2N C NC2 N Y N 0 9.125 1.192 -0.844
38 C3N C NC3 N Y N 0 9.638 2.462 -0.575
39 C7N C NC7 N N N 0 10.744 3.012 -1.384
40 S7N S NS7 N N N 0 11.971 1.973 -1.973
41 N7N N NN7 N N N 0 10.789 4.33 -1.658
42 C4N C NC4 N Y N 0 9.082 3.209 0.471
43 C5N C NC5 N Y N 0 8.047 2.649 1.198
44 C6N C NC6 N Y N 0 7.598 1.381 0.872
45 P2B P AP2* N N N 0 -8.043 1.257 1.924
46 O1X O AOP1 N N N 0 -7.526 0.56 3.124
47 O2X O AOP2 N N N 0 -9.176 2.313 2.363
48 O3X O AOP3 N N N 0 -8.677 0.18 0.909
49 HOA2 H 2HOA N N N 0 -1.347 -2.831 0.2
50 H51A H AH51 N N N 0 -2.858 -0.725 1.304
51 H52A H AH52 N N N 0 -1.914 0.68 1.854
52 H4B H AH4* N N N 0 -2.959 2.034 -0.001
53 H3B H AH3* N N N 0 -4.222 1.036 2.433
54 HO3A H AHO3 N N N 0 -3.583 3.199 2.035
55 H2B H AH2* N N N 0 -6.09 0.098 1.351
56 H1B H AH1* N N N 0 -5.596 1.942 -1.055
57 H8A H AH8 N N N 0 -5.356 -1.855 -1.068
58 H61A H AH61 N N N 0 -9.515 -2.888 -3.3
59 H62A H AH62 N N N 0 -10.874 -2.029 -3.788
60 H2A H AH2 N N N 0 -10.141 2.3 -2.558
61 H51N H NH51 N N N 0 4.352 -3.297 0.827
62 H52N H NH52 N N N 0 4.52 -1.673 1.535
63 H4D H NH4* N N N 0 5.877 -2.588 -1.049
64 H3D H NH3* N N N 0 6.709 -2.634 1.858
65 HO3N H NHO3 N N N 0 8.07 -4.261 0.994
66 H2D H NH2* N N N 0 8.473 -1.18 1.51
67 HO2N H NHO2 N N N 0 9.573 -3.033 0.668
68 H1D H NH1* N N N 0 7.896 -0.919 -1.446
69 H2N H NH2 N N N 0 9.543 0.605 -1.648
70 H71N H NH71 N N N 0 11.515 4.691 -2.189
71 H72N H NH72 N N N 0 10.091 4.918 -1.327
72 H4N H NH4 N N N 0 9.452 4.196 0.705
73 H5N H NH5 N N N 0 7.594 3.195 2.012
74 H6N H NH6 N N N 0 6.791 0.941 1.438
75 HOP2 H 2HOP N N N 0 -9.878 1.807 2.795
76 HOP3 H 3HOP N N N 0 -9.0 0.675 0.144