Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TRD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.403 0.0 7.495
2 C2 C C2 N N N 0 0.48 0.0 6.246
3 C3 C C3 N N N 0 -0.403 0.0 4.997
4 C4 C C4 N N N 0 0.48 0.0 3.747
5 C5 C C5 N N N 0 -0.403 0.0 2.498
6 C6 C C6 N N N 0 0.48 0.0 1.249
7 C7 C C7 N N N 0 -0.403 0.0 0.0
8 C8 C C8 N N N 0 0.48 0.0 -1.249
9 C9 C C9 N N N 0 -0.403 0.0 -2.498
10 C10 C C10 N N N 0 0.48 0.0 -3.747
11 C11 C C11 N N N 0 -0.403 0.0 -4.997
12 C12 C C12 N N N 0 0.48 0.0 -6.246
13 C13 C C13 N N N 0 -0.403 0.0 -7.495
14 H11 H 1H1 N N N 0 -1.032 -0.89 7.495
15 H12 H 2H1 N N N 0 0.226 0.0 8.385
16 H13 H 3H1 N N N 0 -1.032 0.89 7.495
17 H21 H 1H2 N N N 0 1.109 0.89 6.246
18 H22 H 2H2 N N N 0 1.109 -0.89 6.246
19 H31 H 1H3 N N N 0 -1.032 -0.89 4.997
20 H32 H 2H3 N N N 0 -1.032 0.89 4.997
21 H41 H 1H4 N N N 0 1.109 0.89 3.747
22 H42 H 2H4 N N N 0 1.109 -0.89 3.747
23 H51 H 1H5 N N N 0 -1.032 -0.89 2.498
24 H52 H 2H5 N N N 0 -1.032 0.89 2.498
25 H61 H 1H6 N N N 0 1.109 0.89 1.249
26 H62 H 2H6 N N N 0 1.109 -0.89 1.249
27 H71 H 1H7 N N N 0 -1.032 -0.89 0.0
28 H72 H 2H7 N N N 0 -1.032 0.89 0.0
29 H81 H 1H8 N N N 0 1.109 0.89 -1.249
30 H82 H 2H8 N N N 0 1.109 -0.89 -1.249
31 H91 H 1H9 N N N 0 -1.032 -0.89 -2.498
32 H92 H 2H9 N N N 0 -1.032 0.89 -2.498
33 H101 H 1H10 N N N 0 1.109 0.89 -3.747
34 H102 H 2H10 N N N 0 1.109 -0.89 -3.747
35 H111 H 1H11 N N N 0 -1.032 -0.89 -4.997
36 H112 H 2H11 N N N 0 -1.032 0.89 -4.997
37 H121 H 1H12 N N N 0 1.109 0.89 -6.246
38 H122 H 2H12 N N N 0 1.109 -0.89 -6.246
39 H131 H 1H13 N N N 0 0.226 0.0 -8.385
40 H132 H 2H13 N N N 0 -1.032 -0.89 -7.495
41 H133 H 3H13 N N N 0 -1.032 0.89 -7.495