Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TV5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 5.781 -2.644 1.392
2 C2 C C2 N N N 0 4.586 -3.173 0.597
3 C3 C C3 N N N 0 3.987 -4.381 1.32
4 C8 C C7 N N N 0 0.743 -0.753 -1.773
5 C5 C C4 N Y N 0 3.543 -2.091 0.479
6 C6 C C5 N Y N 0 2.717 -2.053 -0.626
7 C7 C C6 N Y N 0 1.751 -1.051 -0.737
8 C12 C C9 N Y N 0 -2.341 0.184 -1.933
9 O9 O O1 N N N 0 0.582 -1.396 -2.791
10 C11 C C8 N N N 0 -1.058 0.923 -2.215
11 C13 C C10 N Y N 0 -3.213 0.671 -0.978
12 C14 C C11 N Y N 0 -4.394 -0.013 -0.729
13 C15 C C12 N Y N 0 -4.653 -1.167 -1.454
14 N18 N N1 N Y N 0 -2.619 -0.917 -2.603
15 C19 C C13 R N N 0 0.516 0.829 -0.137
16 C21 C C14 N N N 0 2.026 2.303 -1.273
17 C22 C C15 N N N 0 2.566 3.735 -1.252
18 C24 C C16 N N N 0 4.0 3.942 -0.762
19 C25 C C17 N N N 0 3.67 4.089 -2.25
20 C26 C C18 N Y N 0 1.633 -0.097 0.276
21 C27 C C19 N Y N 0 2.463 -0.144 1.375
22 C31 C C20 N Y N 0 -0.614 1.715 1.913
23 C35 C C21 N Y N 0 -2.6 -0.201 1.73
24 C36 C C22 N Y N 0 -1.588 -0.162 0.789
25 O4 O O2 N N N 0 5.017 -3.564 -0.708
26 N10 N N2 N N N 0 0.029 0.333 -1.429
27 CL1 CL CL1 N N N 0 -6.115 -2.064 -1.186
28 O23 O O4 N N N 0 1.609 4.749 -0.939
29 C17 C C23 N Y N 0 -3.732 -1.594 -2.394
30 O20 O O3 N N N 0 1.01 2.162 -0.278
31 F28 F F1 N N N 0 2.344 0.782 2.352
32 C29 C C24 N Y N 0 3.416 -1.145 1.48
33 C30 C C25 N Y N 0 -0.593 0.793 0.883
34 C32 C C26 N Y N 0 -1.628 1.68 2.851
35 C33 C C27 N Y N 0 -2.622 0.721 2.76
36 CL2 CL CL2 N N N 0 -3.896 0.677 3.938
37 H38 H H1 N N N 0 5.452 -2.345 2.388
38 H37 H H2 N N N 0 6.535 -3.426 1.478
39 H42 H H4 N N N 0 3.658 -4.082 2.316
40 H39 H H3 N N N 0 6.208 -1.783 0.877
41 H41 H H5 N N N 0 3.135 -4.758 0.754
42 H40 H H6 N N N 0 4.741 -5.163 1.406
43 H44 H H7 N N N 0 2.818 -2.795 -1.403
44 H45 H H8 N N N 0 -0.822 0.847 -3.276
45 H46 H H9 N N N 0 -1.176 1.972 -1.942
46 H47 H H10 N N N 0 -2.979 1.573 -0.432
47 H48 H H11 N N N 0 -5.094 0.344 0.011
48 H51 H H12 N N N 0 1.605 2.089 -2.255
49 H50 H H13 N N N 0 2.838 1.606 -1.066
50 H54 H H14 N N N 0 4.215 4.852 -0.202
51 H53 H H15 N N N 0 4.56 3.058 -0.456
52 H55 H H16 N N N 0 4.012 3.302 -2.922
53 H56 H H17 N N N 0 3.667 5.095 -2.667
54 H58 H H18 N N N 0 0.164 2.461 1.986
55 H60 H H19 N N N 0 -3.377 -0.947 1.656
56 H61 H H20 N N N 0 -1.575 -0.877 -0.021
57 H43 H H21 N N N 0 4.309 -3.91 -1.269
58 H57 H H24 N N N 0 4.067 -1.182 2.341
59 H49 H H22 N N N 0 -3.925 -2.492 -2.962
60 H52 H H23 N N N 0 0.936 4.472 -0.303
61 H59 H H25 N N N 0 -1.645 2.4 3.656