Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TXP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 80


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2N O O2N N N N 0 3.368 -0.63 -2.817
2 PN P PN R N N 0 3.306 0.006 -4.303
3 O1N O O1N N N N 0 2.832 1.429 -4.364
4 O5'A O O5* N N N 0 2.431 -1.061 -5.147
5 C5'A C C5* N N N 0 2.826 -2.422 -5.131
6 C4'A C C4* R N N 0 1.856 -3.221 -5.991
7 C3'A C C3* S N N 0 2.191 -4.704 -6.057
8 O3'A O O3* N N N 0 0.997 -5.411 -6.393
9 C2'A C C2* R N N 0 3.174 -4.757 -7.207
10 O2'A O O2* N N N 0 3.256 -6.044 -7.785
11 C1'A C C1* R N N 0 2.599 -3.724 -8.161
12 N1N N N1N N N N 0 3.61 -3.087 -8.954
13 C6N C C6N N N N 0 3.023 -2.023 -9.788
14 C5N C C5N N N N 0 3.988 -1.442 -10.785
15 C4N C C4N N N N 0 5.134 -2.057 -11.106
16 C3N C C3N S N N 0 5.498 -3.388 -10.515
17 C2N C C2N N N N 0 4.324 -4.065 -9.786
18 C7N C C7N N N N 0 5.962 -4.255 -11.645
19 O7N O O7N N N N 0 5.219 -4.576 -12.569
20 N7N N N7N N N N 0 7.271 -4.66 -11.532
21 O4'A O O4* N N N 0 1.95 -2.733 -7.348
22 O3 O O3 N N N 0 4.804 -0.228 -4.861
23 PA P PA R N N 0 5.448 0.043 -6.319
24 O1A O O1A N N N 0 5.391 1.473 -6.773
25 O2A O O2A N N N 0 4.663 -0.994 -7.282
26 O5' O O5' N N N 0 6.938 -0.574 -6.178
27 C5' C C5' N N N 0 7.792 -0.63 -7.307
28 C4' C C4' R N N 0 9.119 -1.249 -6.895
29 C3' C C3' R N N 0 10.107 -1.364 -8.051
30 O3' O O3' N N N 0 11.434 -1.36 -7.525
31 O4' O O4' N N N 0 8.87 -2.598 -6.435
32 C1' C C1' R N N 0 9.499 -3.522 -7.344
33 C2' C C2' R N N 0 9.79 -2.736 -8.613
34 O2' O O2' N N N 0 10.861 -3.295 -9.345
35 P2 P P2 N N N 0 11.41 -2.501 -10.648
36 OP3 O OP3 N N N 0 10.177 -2.582 -11.692
37 OP2 O OP2 N N N 0 12.493 -3.527 -11.272
38 OP1 O OP1 N N N 0 11.929 -1.12 -10.375
39 N9A N N9A N Y N 0 8.632 -4.681 -7.547
40 C4A C C4A N Y N 0 9.025 -5.971 -7.771
41 N3A N N3A N Y N 0 10.279 -6.441 -7.852
42 C2A C C2A N Y N 0 10.27 -7.771 -8.084
43 N1A N N1A N Y N 0 9.21 -8.602 -8.229
44 C6A C C6A N Y N 0 7.972 -8.058 -8.135
45 N6A N N6A N N N 0 6.832 -8.868 -8.276
46 C5A C C5A N Y N 0 7.849 -6.693 -7.897
47 N7A N N7A N Y N 0 6.758 -5.873 -7.755
48 C8A C C8A N Y N 0 7.261 -4.674 -7.546
49 HO2N H HO2N N N N 0 2.592 -0.532 -2.225
50 H5'1 H 1H5* N N N 0 3.837 -2.506 -5.53
51 H5'2 H 2H5* N N N 0 2.806 -2.789 -4.104
52 H4'A H H4* N N N 0 0.833 -3.043 -5.645
53 H3'A H H3* N N N 0 2.575 -5.125 -5.124
54 HO3A H HO3* N N N 0 1.19 -6.352 -6.267
55 H2'A H H2* N N N 0 4.17 -4.464 -6.853
56 HO2' H HO2* N N N 0 3.615 -6.642 -7.106
57 H1'A H H1* N N N 0 1.845 -4.164 -8.823
58 H6N1 H 1H6N N N N 0 2.687 -1.213 -9.129
59 H6N2 H 2H6N N N N 0 2.145 -2.391 -10.334
60 H5N H H5N N N N 0 3.737 -0.491 -11.245
61 H4N H H4N N N N 0 5.815 -1.582 -11.807
62 H7N1 H 1H7N N N N 0 7.662 -5.253 -12.257
63 H7N2 H 2H7N N N N 0 7.862 -4.389 -10.752
64 H2N1 H 1H2N N N N 0 3.637 -4.542 -10.5
65 H2N2 H 2H2N N N N 0 4.726 -4.868 -9.156
66 H3N H H3N N N N 0 6.343 -3.252 -9.83
67 HO2A H HO2A N N N 0 3.761 -0.765 -7.59
68 H5'A H 1H5' N N N 0 7.311 -1.233 -8.083
69 H5'B H 2H5' N N N 0 7.943 0.386 -7.686
70 H4' H H4' N N N 0 9.536 -0.685 -6.054
71 H3' H H3' N N N 0 10.039 -0.558 -8.787
72 HOP3 H HOP3 N N N 0 10.246 -2.104 -12.545
73 HO3' H HO3' N N N 0 11.921 -2.048 -8.004
74 H1' H H1' N N N 0 10.407 -3.919 -6.876
75 H2' H H2' N N N 0 8.905 -2.688 -9.259
76 HOP2 H HOP2 N N N 0 13.041 -3.236 -12.031
77 H2A H H2A N N N 0 11.245 -8.24 -8.164
78 H6A1 H 1H6A N N N 0 6.189 -8.951 -7.511
79 H6A2 H 2H6A N N N 0 6.722 -9.425 -9.102
80 H8A H H8A N N N 0 6.689 -3.77 -7.389