Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : U8B

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 67


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 1.988 -3.446 1.401
2 C5 C C2 R N N 0 2.096 -2.007 0.892
3 C7 C C3 N N N 0 0.767 0.443 0.347
4 C8 C C4 R N N 0 -0.506 1.283 0.468
5 C10 C C5 N N N 0 -2.884 0.835 0.177
6 C13 C C6 N N N 0 -5.349 0.579 0.103
7 C21 C C7 N N N 0 0.898 4.744 -0.371
8 C22 C C8 N N N 0 2.036 5.456 0.313
9 O18 O O1 N N N 0 -8.528 1.046 -0.394
10 C16 C C9 N N N 0 -7.801 0.21 0.089
11 O17 O O2 N N N 0 -8.149 -0.402 1.232
12 C14 C C10 S N N 0 -6.504 -0.145 -0.592
13 N15 N N1 N N N 0 -6.563 0.266 -2.001
14 C12 C C11 N N N 0 -4.022 0.123 -0.507
15 O11 O O3 N N N 0 -3.112 1.629 1.065
16 N9 N N2 N N N 0 -1.612 0.59 -0.198
17 C19 C C12 N N N 0 -0.287 2.623 -0.185
18 O25 O O4 N N N 0 -0.987 2.966 -1.115
19 N20 N N3 N N N 0 0.686 3.441 0.264
20 O23 O O5 N N N 0 2.611 4.929 1.236
21 O24 O O6 N N N 0 2.412 6.676 -0.103
22 S6 S S1 N N N 0 0.504 -1.171 1.133
23 C3 C C13 N Y N 0 1.017 -4.211 0.539
24 C55 C C14 N Y N 0 1.468 -4.886 -0.58
25 C56 C C15 N Y N 0 0.578 -5.588 -1.37
26 C57 C C16 N Y N 0 -0.765 -5.616 -1.041
27 C1 C C17 N Y N 0 -1.216 -4.942 0.078
28 C2 C C18 N Y N 0 -0.325 -4.244 0.871
29 C53 C C19 N N N 0 3.152 -1.287 1.676
30 O54 O O7 N N N 0 3.23 -1.49 2.869
31 N52 N N4 N N N 0 4.011 -0.431 1.113
32 N26 N N5 N N N 0 2.412 -2.026 -0.53
33 C27 C C20 N N N 0 3.274 -1.173 -1.092
34 O28 O O8 N N N 0 3.48 -1.256 -2.284
35 C29 C C21 R N N 0 3.998 -0.119 -0.309
36 C50 C C22 N N N 0 5.439 -0.02 -0.814
37 O51 O O9 N N N 0 5.435 0.328 -2.2
38 S30 S S2 N N N 0 3.172 1.477 -0.557
39 H1 H H1 N N N 0 2.967 -3.922 1.355
40 H2 H H2 N N N 0 1.633 -3.441 2.431
41 H3 H H3 N N N 0 1.009 0.299 -0.706
42 H4 H H4 N N N 0 1.59 0.958 0.842
43 H5 H H5 N N N 0 -0.748 1.427 1.521
44 H6 H H6 N N N 0 -5.46 1.655 -0.032
45 H7 H H7 N N N 0 -5.36 0.343 1.167
46 H8 H H8 N N N 0 -0.009 5.342 -0.285
47 H9 H H9 N N N 0 1.14 4.6 -1.424
48 H10 H H10 N N N 0 -8.99 -0.141 1.631
49 H11 H H11 N N N 0 -6.346 -1.222 -0.534
50 H12 H H12 N N N 0 -7.277 -0.245 -2.498
51 H13 H H13 N N N 0 -6.709 1.261 -2.082
52 H15 H H15 N N N 0 -4.011 0.359 -1.571
53 H16 H H16 N N N 0 -3.91 -0.953 -0.372
54 H17 H H17 N N N 0 -1.43 -0.045 -0.908
55 H18 H H18 N N N 0 1.245 3.166 1.007
56 H19 H H19 N N N 0 3.147 7.093 0.367
57 H20 H H20 N N N 0 2.517 -4.864 -0.837
58 H21 H H21 N N N 0 0.93 -6.114 -2.245
59 H22 H H22 N N N 0 -1.461 -6.164 -1.659
60 H23 H H23 N N N 0 -2.265 -4.963 0.334
61 H24 H H24 N N N 0 -0.678 -3.717 1.745
62 H25 H H25 N N N 0 4.671 0.001 1.677
63 H26 H H26 N N N 0 1.978 -2.685 -1.093
64 H27 H H27 N N N 0 5.97 0.745 -0.249
65 H28 H H28 N N N 0 5.937 -0.981 -0.683
66 H29 H H29 N N N 0 6.317 0.408 -2.588
67 H30 H H30 N N N 0 3.91 2.319 0.188