![spacer](http://www.ebi.ac.uk/inc/images/spacer.gif) |
PDBeChem : Atoms of Molecule
Molecule : UD4
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 66
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
N3 |
N |
N3 |
N |
N |
N |
0 |
-6.747 |
-2.999 |
-0.873 |
2 |
C2 |
C |
C2 |
N |
N |
N |
0 |
-6.271 |
-1.808 |
-1.279 |
3 |
N1 |
N |
N1 |
N |
N |
N |
0 |
-5.643 |
-0.985 |
-0.42 |
4 |
C4 |
C |
C4 |
N |
N |
N |
0 |
-6.606 |
-3.385 |
0.412 |
5 |
C5 |
C |
C5 |
N |
N |
N |
0 |
-5.946 |
-2.529 |
1.326 |
6 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-5.473 |
-1.342 |
0.89 |
7 |
O7' |
O |
O7' |
N |
N |
N |
0 |
7.161 |
1.208 |
-1.675 |
8 |
C7' |
C |
C7' |
N |
N |
N |
0 |
6.166 |
1.044 |
-2.35 |
9 |
C8' |
C |
C8' |
N |
N |
N |
0 |
5.894 |
1.95 |
-3.524 |
10 |
N2' |
N |
N2' |
N |
N |
N |
0 |
5.305 |
0.052 |
-2.051 |
11 |
C2' |
C |
C2' |
R |
N |
N |
0 |
5.569 |
-0.828 |
-0.91 |
12 |
C3' |
C |
C3' |
S |
N |
N |
0 |
4.869 |
-2.173 |
-1.128 |
13 |
O3' |
O |
O3' |
N |
N |
N |
0 |
5.417 |
-2.816 |
-2.28 |
14 |
C4' |
C |
C4' |
S |
N |
N |
0 |
5.087 |
-3.056 |
0.105 |
15 |
N4A |
N |
N4A |
N |
N |
N |
0 |
4.358 |
-4.32 |
-0.062 |
16 |
C5' |
C |
C5' |
R |
N |
N |
0 |
4.568 |
-2.325 |
1.345 |
17 |
C6' |
C |
C6' |
N |
N |
N |
0 |
4.837 |
-3.174 |
2.589 |
18 |
O5' |
O |
O5' |
N |
N |
N |
0 |
5.238 |
-1.069 |
1.472 |
19 |
C1' |
C |
C1' |
R |
N |
N |
0 |
5.031 |
-0.183 |
0.37 |
20 |
O1' |
O |
O1' |
N |
N |
N |
0 |
3.633 |
0.075 |
0.222 |
21 |
PB |
P |
PB |
R |
N |
N |
0 |
2.883 |
1.293 |
0.961 |
22 |
O2B |
O |
O2B |
N |
N |
N |
0 |
3.125 |
1.209 |
2.419 |
23 |
O1B |
O |
O1B |
N |
N |
N |
0 |
3.451 |
2.692 |
0.402 |
24 |
O3A |
O |
O3A |
N |
N |
N |
0 |
1.301 |
1.203 |
0.674 |
25 |
PA |
P |
PA |
R |
N |
N |
0 |
0.004 |
1.89 |
1.334 |
26 |
O2A |
O |
O2A |
N |
N |
N |
0 |
-0.307 |
1.198 |
2.753 |
27 |
O1A |
O |
O1A |
N |
N |
N |
0 |
0.259 |
3.334 |
1.535 |
28 |
O5B |
O |
O5B |
N |
N |
N |
0 |
-1.261 |
1.7 |
0.356 |
29 |
C5B |
C |
C5B |
N |
N |
N |
0 |
-2.538 |
2.288 |
0.611 |
30 |
C4B |
C |
C4B |
R |
N |
N |
0 |
-3.507 |
1.909 |
-0.511 |
31 |
O4B |
O |
O4B |
N |
N |
N |
0 |
-3.764 |
0.495 |
-0.477 |
32 |
C2B |
C |
C2B |
S |
N |
N |
0 |
-4.856 |
2.625 |
-0.302 |
33 |
O3B |
O |
O3B |
N |
N |
N |
0 |
-5.153 |
3.467 |
-1.418 |
34 |
C3B |
C |
C3B |
R |
N |
N |
0 |
-5.885 |
1.473 |
-0.203 |
35 |
O4 |
O |
O4 |
N |
N |
N |
0 |
-7.041 |
-4.461 |
0.781 |
36 |
O2' |
O |
O2' |
N |
N |
N |
0 |
-7.083 |
1.798 |
-0.911 |
37 |
C1B |
C |
C1B |
R |
N |
N |
0 |
-5.134 |
0.306 |
-0.892 |
38 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-6.411 |
-1.47 |
-2.439 |
39 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-5.824 |
-2.821 |
2.358 |
40 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-4.968 |
-0.676 |
1.573 |
41 |
H8' |
H |
H8' |
N |
N |
N |
0 |
6.695 |
2.685 |
-3.608 |
42 |
H8'A |
H |
H8'A |
N |
N |
N |
0 |
5.848 |
1.357 |
-4.437 |
43 |
H8'B |
H |
H8'B |
N |
N |
N |
0 |
4.944 |
2.463 |
-3.374 |
44 |
HN2' |
H |
HN2' |
N |
N |
N |
0 |
4.509 |
-0.079 |
-2.59 |
45 |
H2' |
H |
H2' |
N |
N |
N |
0 |
6.643 |
-0.988 |
-0.814 |
46 |
H3' |
H |
H3' |
N |
N |
N |
0 |
3.801 |
-2.009 |
-1.274 |
47 |
HO3' |
H |
HO3' |
N |
N |
N |
0 |
5.019 |
-3.675 |
-2.478 |
48 |
H4' |
H |
H4' |
N |
N |
N |
0 |
6.151 |
-3.262 |
0.221 |
49 |
HN4A |
H |
HN4A |
N |
N |
N |
0 |
4.487 |
-4.92 |
0.74 |
50 |
HN4B |
H |
HN4B |
N |
N |
N |
0 |
3.378 |
-4.152 |
-0.234 |
51 |
H5' |
H |
H5' |
N |
N |
N |
0 |
3.496 |
-2.156 |
1.245 |
52 |
H6' |
H |
H6' |
N |
N |
N |
0 |
5.909 |
-3.342 |
2.689 |
53 |
H6'A |
H |
H6'A |
N |
N |
N |
0 |
4.467 |
-2.654 |
3.472 |
54 |
H6'B |
H |
H6'B |
N |
N |
N |
0 |
4.326 |
-4.133 |
2.491 |
55 |
H1' |
H |
H1' |
N |
N |
N |
0 |
5.556 |
0.754 |
0.553 |
56 |
HO1B |
H |
HO1B |
N |
N |
N |
0 |
3.327 |
2.815 |
-0.549 |
57 |
HO2A |
H |
HO2A |
N |
N |
N |
0 |
-0.484 |
0.249 |
2.698 |
58 |
H5B |
H |
H5B |
N |
N |
N |
0 |
-2.922 |
1.923 |
1.563 |
59 |
H5BA |
H |
H5BA |
N |
N |
N |
0 |
-2.436 |
3.373 |
0.652 |
60 |
H4B |
H |
H4B |
N |
N |
N |
0 |
-3.083 |
2.185 |
-1.476 |
61 |
H2B |
H |
H2B |
N |
N |
N |
0 |
-4.84 |
3.206 |
0.62 |
62 |
HO3B |
H |
HO3B |
N |
N |
N |
0 |
-5.991 |
3.943 |
-1.339 |
63 |
H3B |
H |
H3B |
N |
N |
N |
0 |
-6.103 |
1.235 |
0.838 |
64 |
HO2' |
H |
HO2' |
N |
N |
N |
0 |
-7.542 |
2.579 |
-0.572 |
65 |
H1B |
H |
H1B |
N |
N |
N |
0 |
-5.223 |
0.379 |
-1.976 |
66 |
HN3 |
H |
HN3 |
N |
N |
N |
0 |
-7.198 |
-3.58 |
-1.505 |
|