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PDBeChem : Atoms of Molecule
Molecule : UMQ
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 78
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C2 |
C |
C2 |
R |
N |
N |
0 |
0.524 |
0.468 |
-6.517 |
2 |
C4 |
C |
C4 |
S |
N |
N |
0 |
-1.935 |
0.085 |
-6.512 |
3 |
C5 |
C |
C5 |
R |
N |
N |
0 |
-1.718 |
-0.675 |
-5.202 |
4 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-2.826 |
-1.717 |
-5.031 |
5 |
O2 |
O |
O2 |
N |
N |
N |
0 |
1.553 |
1.459 |
-6.504 |
6 |
O4 |
O |
O4 |
N |
N |
N |
0 |
-3.217 |
0.716 |
-6.492 |
7 |
C1 |
C |
C1 |
R |
N |
N |
0 |
0.556 |
-0.321 |
-5.207 |
8 |
C3 |
C |
C3 |
S |
N |
N |
0 |
-0.84 |
1.148 |
-6.659 |
9 |
O1 |
O |
O1 |
N |
N |
N |
0 |
0.318 |
0.565 |
-4.112 |
10 |
O3 |
O |
O3 |
N |
N |
N |
0 |
-0.941 |
1.766 |
-7.943 |
11 |
O5 |
O |
O5 |
N |
N |
N |
0 |
-0.451 |
-1.33 |
-5.227 |
12 |
O6 |
O |
O6 |
N |
N |
N |
0 |
-2.629 |
-2.424 |
-3.805 |
13 |
C1' |
C |
C1' |
R |
N |
N |
0 |
1.674 |
0.039 |
-0.258 |
14 |
C2' |
C |
C2' |
R |
N |
N |
0 |
2.577 |
-0.562 |
-1.338 |
15 |
C3' |
C |
C3' |
R |
N |
N |
0 |
2.213 |
0.054 |
-2.693 |
16 |
C4' |
C |
C4' |
S |
N |
N |
0 |
0.708 |
-0.128 |
-2.926 |
17 |
C5' |
C |
C5' |
R |
N |
N |
0 |
-0.053 |
0.438 |
-1.726 |
18 |
C6' |
C |
C6' |
N |
N |
N |
0 |
-1.557 |
0.289 |
-1.964 |
19 |
O1' |
O |
O1' |
N |
N |
N |
0 |
2.029 |
-0.505 |
1.014 |
20 |
O3' |
O |
O3' |
N |
N |
N |
0 |
2.941 |
-0.601 |
-3.733 |
21 |
O5' |
O |
O5' |
N |
N |
N |
0 |
0.311 |
-0.269 |
-0.543 |
22 |
O6' |
O |
O6' |
N |
N |
N |
0 |
-2.272 |
0.896 |
-0.886 |
23 |
O2' |
O |
O2' |
N |
N |
N |
0 |
3.943 |
-0.274 |
-1.034 |
24 |
CA |
C |
CA |
N |
N |
N |
0 |
1.159 |
0.093 |
1.976 |
25 |
CB |
C |
CB |
N |
N |
N |
0 |
1.487 |
-0.449 |
3.368 |
26 |
CC |
C |
CC |
N |
N |
N |
0 |
0.555 |
0.191 |
4.398 |
27 |
CD |
C |
CD |
N |
N |
N |
0 |
0.884 |
-0.351 |
5.791 |
28 |
CF |
C |
CF |
N |
N |
N |
0 |
-0.047 |
0.289 |
6.821 |
29 |
CG |
C |
CG |
N |
N |
N |
0 |
0.28 |
-0.252 |
8.213 |
30 |
CH |
C |
CH |
N |
N |
N |
0 |
-0.651 |
0.388 |
9.244 |
31 |
CI |
C |
CI |
N |
N |
N |
0 |
-0.322 |
-0.154 |
10.636 |
32 |
CJ |
C |
CJ |
N |
N |
N |
0 |
-1.254 |
0.486 |
11.666 |
33 |
CK |
C |
CK |
N |
N |
N |
0 |
-0.925 |
-0.056 |
13.058 |
34 |
CL |
C |
CL |
N |
N |
N |
0 |
-1.857 |
0.584 |
14.089 |
35 |
H21 |
H |
1H2 |
N |
N |
N |
0 |
0.682 |
-0.209 |
-7.356 |
36 |
H41 |
H |
1H4 |
N |
N |
N |
0 |
-1.883 |
-0.609 |
-7.35 |
37 |
H51 |
H |
1H5 |
N |
N |
N |
0 |
-1.747 |
0.024 |
-4.367 |
38 |
H61 |
H |
1H6 |
N |
N |
N |
0 |
-3.794 |
-1.217 |
-5.011 |
39 |
H62 |
H |
2H6 |
N |
N |
N |
0 |
-2.796 |
-2.419 |
-5.864 |
40 |
HO21 |
H |
1HO2 |
N |
N |
N |
0 |
2.393 |
0.989 |
-6.413 |
41 |
HO41 |
H |
1HO4 |
N |
N |
N |
0 |
-3.312 |
1.182 |
-7.334 |
42 |
H11 |
H |
1H1 |
N |
N |
N |
0 |
1.534 |
-0.788 |
-5.089 |
43 |
H31 |
H |
1H3 |
N |
N |
N |
0 |
-0.956 |
1.902 |
-5.88 |
44 |
HO31 |
H |
1HO3 |
N |
N |
N |
0 |
-0.236 |
2.426 |
-7.992 |
45 |
HO61 |
H |
1HO6 |
N |
N |
N |
0 |
-3.347 |
-3.069 |
-3.736 |
46 |
H1'1 |
H |
1H1' |
N |
N |
N |
0 |
1.804 |
1.121 |
-0.239 |
47 |
H2'1 |
H |
1H2' |
N |
N |
N |
0 |
2.432 |
-1.641 |
-1.377 |
48 |
H3'1 |
H |
1H3' |
N |
N |
N |
0 |
2.456 |
1.116 |
-2.691 |
49 |
H4'1 |
H |
1H4' |
N |
N |
N |
0 |
0.482 |
-1.189 |
-3.033 |
50 |
H5'1 |
H |
1H5' |
N |
N |
N |
0 |
0.192 |
1.493 |
-1.607 |
51 |
H6'1 |
H |
1H6' |
N |
N |
N |
0 |
-1.827 |
0.778 |
-2.9 |
52 |
H6'2 |
H |
2H6' |
N |
N |
N |
0 |
-1.813 |
-0.768 |
-2.02 |
53 |
HO3' |
H |
'HO3 |
N |
N |
N |
0 |
3.88 |
-0.461 |
-3.548 |
54 |
HO6' |
H |
'HO6 |
N |
N |
N |
0 |
-3.213 |
0.781 |
-1.075 |
55 |
HO2' |
H |
'HO2 |
N |
N |
N |
0 |
4.13 |
-0.679 |
-0.176 |
56 |
HA1 |
H |
1HA |
N |
N |
N |
0 |
0.124 |
-0.144 |
1.728 |
57 |
HA2 |
H |
2HA |
N |
N |
N |
0 |
1.295 |
1.174 |
1.966 |
58 |
HB1 |
H |
1HB |
N |
N |
N |
0 |
2.522 |
-0.211 |
3.616 |
59 |
HB2 |
H |
2HB |
N |
N |
N |
0 |
1.351 |
-1.53 |
3.378 |
60 |
HC1 |
H |
1HC |
N |
N |
N |
0 |
-0.478 |
-0.046 |
4.15 |
61 |
HC2 |
H |
2HC |
N |
N |
N |
0 |
0.691 |
1.273 |
4.389 |
62 |
HD1 |
H |
1HD |
N |
N |
N |
0 |
1.918 |
-0.112 |
6.039 |
63 |
HD2 |
H |
2HD |
N |
N |
N |
0 |
0.748 |
-1.432 |
5.801 |
64 |
HF1 |
H |
1HF |
N |
N |
N |
0 |
-1.082 |
0.051 |
6.573 |
65 |
HF2 |
H |
2HF |
N |
N |
N |
0 |
0.088 |
1.371 |
6.811 |
66 |
HG1 |
H |
1HG |
N |
N |
N |
0 |
1.315 |
-0.014 |
8.461 |
67 |
HG2 |
H |
2HG |
N |
N |
N |
0 |
0.144 |
-1.334 |
8.223 |
68 |
HH1 |
H |
1HH |
N |
N |
N |
0 |
-1.685 |
0.149 |
8.996 |
69 |
HH2 |
H |
2HH |
N |
N |
N |
0 |
-0.514 |
1.469 |
9.234 |
70 |
HI1 |
H |
1HI |
N |
N |
N |
0 |
0.711 |
0.083 |
10.884 |
71 |
HI2 |
H |
2HI |
N |
N |
N |
0 |
-0.458 |
-1.236 |
10.646 |
72 |
HJ1 |
H |
1HJ |
N |
N |
N |
0 |
-2.288 |
0.248 |
11.418 |
73 |
HJ2 |
H |
2HJ |
N |
N |
N |
0 |
-1.118 |
1.567 |
11.656 |
74 |
HK1 |
H |
1HK |
N |
N |
N |
0 |
0.108 |
0.181 |
13.306 |
75 |
HK2 |
H |
2HK |
N |
N |
N |
0 |
-1.062 |
-1.138 |
13.068 |
76 |
HL1 |
H |
1HL |
N |
N |
N |
0 |
-1.623 |
0.197 |
15.08 |
77 |
HL2 |
H |
2HL |
N |
N |
N |
0 |
-1.721 |
1.665 |
14.079 |
78 |
HL3 |
H |
3HL |
N |
N |
N |
0 |
-2.892 |
0.346 |
13.841 |
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