Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UP8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 2.88 -0.568 0.035
2 C2 C C2 N Y N 0 1.814 0.321 0.013
3 C3 C C3 N Y N 0 2.05 1.693 -0.021
4 C4 C C4 N Y N 0 0.994 2.581 -0.043
5 C5 C C5 N Y N 0 -0.312 2.122 -0.033
6 C6 C C6 N Y N 0 -0.573 0.757 0.001
7 C7 C C7 N N N 0 -1.968 0.268 0.013
8 O8 O O8 N N N 0 -2.193 -0.925 0.043
9 O9 O O9 N N N 0 -2.99 1.145 -0.01
10 C10 C C10 N Y N 0 0.499 -0.159 0.019
11 C11 C C11 N N N 0 0.237 -1.608 0.048
12 O12 O O12 N N N 0 0.121 -2.296 -1.105
13 O13 O O13 N N N 0 0.125 -2.184 1.112
14 H11N H H11N N N N 0 3.79 -0.234 0.027
15 H12N H H12N N N N 0 2.714 -1.523 0.063
16 H3 H H3 N N N 0 3.064 2.064 -0.029
17 H4 H H4 N N N 0 1.189 3.643 -0.07
18 H5 H H5 N N N 0 -1.13 2.826 -0.05
19 H9 H H9 N N N 0 -3.885 0.778 -0.001
20 H12 H H12 N N N 0 -0.051 -3.245 -1.035