Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UWJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N N N 0 -1.644 -0.88 0.697
2 C6 C C2 N N N 0 -2.576 -1.479 -1.383
3 OP2 O O1 N N N 0 4.666 -1.295 1.617
4 P P P1 N N N 0 4.952 -0.881 0.225
5 OP1 O O2 N N N 0 5.593 -2.118 -0.582
6 O5' O O3 N N N 0 3.584 -0.424 -0.491
7 C5' C C3 N N N 0 2.724 0.582 0.046
8 C4' C C4 R N N 0 1.519 0.77 -0.879
9 O4' O O4 N N N 0 0.694 -0.415 -0.885
10 C3' C C5 R N N 0 0.573 1.867 -0.329
11 O3' O O5 N N N 0 0.986 3.163 -0.767
12 C2' C C6 S N N 0 -0.783 1.475 -0.964
13 SE2 SE SE1 N N N 0 -2.238 1.705 0.329
14 CA' C C7 N N N 0 -2.125 3.63 0.681
15 C1' C C8 R N N 0 -0.614 -0.013 -1.327
16 N1 N N1 N N N 0 -1.637 -0.811 -0.646
17 O2 O O6 N N N 0 -0.802 -0.274 1.333
18 C5 C C9 N N N 0 -3.52 -2.214 -0.756
19 C7 C C10 N N N 0 -4.563 -2.956 -1.551
20 C4 C C11 N N N 0 -3.512 -2.282 0.658
21 N3 N N2 N N N 0 -2.572 -1.605 1.348
22 O4 O O7 N N N 0 -4.352 -2.939 1.246
23 O1 O O8 N N Y 0 5.99 0.35 0.234
24 H6 H H1 N N N 0 -2.567 -1.415 -2.461
25 H1 H H2 N N N 0 6.422 -2.446 -0.206
26 H5'1 H H3 N N N 0 2.379 0.278 1.034
27 H5'2 H H4 N N N 0 3.27 1.522 0.125
28 H4' H H5 N N N 0 1.847 1.014 -1.89
29 H3' H H6 N N N 0 0.521 1.825 0.759
30 HO3' H H7 N N N 0 1.87 3.416 -0.468
31 H2' H H8 N N N 0 -0.971 2.069 -1.858
32 HA'1 H H9 N N N 0 -2.893 3.913 1.401
33 HA'3 H H10 N N N 0 -1.142 3.868 1.086
34 HA'2 H H11 N N N 0 -2.278 4.179 -0.249
35 H1' H H12 N N N 0 -0.697 -0.146 -2.405
36 H72 H H13 N N N 0 -4.199 -3.958 -1.781
37 H2 H H14 N N N 0 -5.481 -3.029 -0.967
38 H71 H H15 N N N 0 -4.763 -2.42 -2.478
39 H3 H H16 N N N 0 -2.565 -1.641 2.318
40 H4 H H17 N N N 0 6.223 0.674 -0.647