Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V35

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.761 0.521 -0.824
2 C2 C C2 N Y N 0 1.452 -0.663 -1.003
3 C3 C C3 N Y N 0 2.766 -0.766 -0.588
4 C4 C C4 N Y N 0 3.39 0.316 0.007
5 C5 C C5 N Y N 0 2.698 1.501 0.186
6 C6 C C6 N Y N 0 1.384 1.602 -0.23
7 C7 C C7 N N N 0 -0.67 0.634 -1.283
8 C8 C C8 S N N 0 -1.605 0.215 -0.147
9 C9 C C9 N N N 0 -5.368 0.904 -0.199
10 C C C N N N 0 -3.918 0.892 0.21
11 N N N N N N 0 -2.996 0.325 -0.593
12 O O O N N N 0 -3.581 1.392 1.263
13 O1B O O1B N N N 0 -0.054 -1.37 0.832
14 O2B O O2B N N N 0 -2.233 -1.725 1.164
15 O3B O O3B N N N 0 -1.336 -2.09 -0.847
16 B B B N N N -1 -1.296 -1.297 0.266
17 CL4 CL CL4 N N N 0 5.041 0.187 0.53
18 H2 H H2 N N N 0 0.965 -1.508 -1.467
19 H3 H H3 N N N 0 3.306 -1.691 -0.727
20 H5 H H5 N N N 0 3.185 2.345 0.651
21 H6 H H6 N N N 0 0.844 2.527 -0.09
22 H71 H H71 N N N 0 -0.88 1.666 -1.564
23 H72 H H72 N N N 0 -0.828 -0.016 -2.143
24 H8 H H8 N N N 0 -1.446 0.865 0.713
25 H91 H H91 N N N 0 -5.477 0.413 -1.166
26 H92 H H92 N N N 0 -5.961 0.373 0.546
27 H93 H H93 N N N 0 -5.716 1.934 -0.274
28 HN H HN N N N 0 -3.253 -0.01 -1.466
29 HOB1 H HOB1 N N N 0 0.2 -2.262 1.108
30 HOB2 H HOB2 N N N 0 -2.261 -1.206 1.98
31 HOB3 H HOB3 N N N 0 -0.696 -1.844 -1.529