Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V9T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 4.643 -0.664 -0.08
2 C15 C C2 N Y N 0 -1.499 -1.435 0.585
3 C17 C C3 N Y N 0 -3.062 0.306 1.131
4 C21 C C4 S N N 0 -7.421 0.958 0.293
5 C22 C C5 N N N 0 -7.371 2.472 0.076
6 C24 C C6 N N N 0 -6.781 3.328 1.198
7 C26 C C7 N N N 0 -9.441 -0.214 -0.996
8 C28 C C8 N N N 0 -8.104 0.827 -2.282
9 C01 C C9 N N N 0 10.005 2.909 0.039
10 C03 C C10 N Y N 0 9.196 0.604 -0.323
11 C04 C C11 N Y N 0 7.893 1.038 -0.102
12 C05 C C12 N Y N 0 6.866 0.102 -0.174
13 C07 C C13 N N N 0 5.162 1.564 -0.878
14 C08 C C14 N N N 0 3.758 2.059 -0.52
15 C09 C C15 N N N 0 2.77 0.894 -0.626
16 C11 C C16 R N N 0 3.224 -0.236 0.301
17 C12 C C17 N N N 0 2.275 -1.428 0.157
18 C14 C C18 N N N 0 -0.114 -1.876 0.334
19 C16 C C19 N Y N 0 -1.765 -0.1 0.898
20 C18 C C20 N Y N 0 -4.103 -0.604 1.057
21 C19 C C21 N N N 0 -5.516 -0.148 1.314
22 C23 C C22 N N N 0 -8.289 3.34 0.939
23 C25 C C23 N N N 0 -7.972 0.189 -0.902
24 C27 C C24 N N N 0 -9.267 -0.152 -2.525
25 C29 C C25 N N N 0 -6.877 -0.821 -0.581
26 C30 C C26 N Y N 0 -3.854 -1.926 0.743
27 C31 C C27 N Y N 0 -2.556 -2.352 0.505
28 C36 C C28 N Y N 0 8.412 -1.538 -0.652
29 N02 N N1 N N N 0 10.255 1.497 -0.259
30 N06 N N2 N N N 0 5.55 0.484 0.038
31 N13 N N3 N N N 0 0.899 -0.99 0.406
32 N20 N N4 N N N 0 -6.128 0.285 0.051
33 N35 N N5 N Y N 0 7.165 -1.166 -0.449
34 N37 N N6 N Y N 0 9.412 -0.682 -0.594
35 O32 O O1 N N N 0 -2.311 -3.65 0.196
36 O33 O O2 N N N 0 0.114 -3.039 0.062
37 O34 O O3 N N N 0 3.211 0.223 1.654
38 H1 H H1 N N N 0 4.974 -1.459 0.588
39 H2 H H2 N N N 0 4.649 -1.027 -1.108
40 H3 H H3 N N N 0 -3.266 1.338 1.373
41 H4 H H4 N N N 0 -7.885 0.682 1.24
42 H5 H H5 N N N 0 -7.192 2.794 -0.95
43 H6 H H6 N N N 0 -6.428 2.812 2.092
44 H7 H H7 N N N 0 -6.214 4.213 0.911
45 H8 H H8 N N N 0 -9.645 -1.216 -0.618
46 H9 H H9 N N N 0 -10.127 0.537 -0.603
47 H10 H H10 N N N 0 -8.411 1.873 -2.253
48 H11 H H11 N N N 0 -7.242 0.656 -2.928
49 H12 H H12 N N N 0 9.352 3.332 -0.724
50 H13 H H13 N N N 0 9.528 2.996 1.015
51 H14 H H14 N N N 0 10.951 3.451 0.048
52 H15 H H15 N N N 0 7.684 2.075 0.119
53 H16 H H16 N N N 0 5.165 1.191 -1.902
54 H17 H H17 N N N 0 5.87 2.388 -0.79
55 H18 H H18 N N N 0 3.757 2.445 0.499
56 H19 H H19 N N N 0 3.464 2.849 -1.211
57 H20 H H20 N N N 0 1.776 1.231 -0.331
58 H21 H H21 N N N 0 2.742 0.532 -1.654
59 H22 H H22 N N N 0 2.35 -1.832 -0.853
60 H23 H H23 N N N 0 2.547 -2.199 0.878
61 H24 H H24 N N N 0 -0.956 0.613 0.958
62 H25 H H25 N N N 0 -6.093 -0.973 1.734
63 H26 H H26 N N N 0 -5.507 0.684 2.018
64 H27 H H27 N N N 0 -8.714 4.233 0.481
65 H28 H H28 N N N 0 -8.928 2.832 1.662
66 H29 H H29 N N N 0 -8.954 -1.099 -2.966
67 H30 H H30 N N N 0 -10.114 0.297 -3.042
68 H31 H H31 N N N 0 -7.189 -1.593 0.122
69 H32 H H32 N N N 0 -6.388 -1.228 -1.466
70 H33 H H33 N N N 0 -4.672 -2.63 0.687
71 H34 H H34 N N N 0 8.622 -2.574 -0.873
72 H35 H H35 N N N 0 11.161 1.186 -0.41
73 H36 H H36 N N N 0 0.718 -0.062 0.623
74 H38 H H38 N N N 0 -2.336 -3.84 -0.751
75 H39 H H39 N N N 0 2.342 0.511 1.964