Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VAB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C8 C C8 N Y N 0 1.01 -2.22 0.076
2 C9 C C9 N Y N 0 -0.351 -2.339 -0.045
3 C11 C C11 N Y N 0 -0.536 0.004 -0.539
4 C7 C C7 N Y N 0 1.639 -0.971 -0.11
5 C10 C C10 N Y N 0 -1.134 -1.23 -0.353
6 C12 C C12 N Y N 0 0.845 0.137 -0.419
7 C5 C C5 N Y N 0 3.302 0.553 -0.241
8 C1 C C1 N N N 0 7.923 -0.252 1.47
9 C2 C C2 N N N 0 7.309 -0.112 0.322
10 C15 C C15 N N N 0 -3.333 -0.361 -0.076
11 C19 C C19 N N N 0 -7.005 0.55 0.357
12 C3 C C3 N N N 0 5.831 -0.386 0.219
13 C17 C C17 N N N 0 -4.829 -0.543 -0.109
14 C18 C C18 N N N 0 -5.509 0.732 0.391
15 N6 N N6 N Y N 0 2.952 -0.669 -0.031
16 N14 N N14 N N N 0 -2.523 -1.362 -0.475
17 O16 O O16 N N N 0 -2.858 0.686 0.31
18 O20 O O20 N N N 0 -7.478 -0.493 -0.027
19 S13 S S13 N Y N 0 1.893 1.543 -0.593
20 O21 O O21 N N N 0 -7.811 1.547 0.755
21 S4 S S4 N N N 0 4.96 1.148 -0.185
22 H8 H H8 N N N 0 1.604 -3.088 0.32
23 H9 H H9 N N N 0 -0.82 -3.302 0.1
24 H31C H H31C N N N 0 5.651 -1.123 -0.564
25 H11 H H11 N N N 0 -1.141 0.865 -0.779
26 H14 H H14 N N N 0 -2.902 -2.174 -0.846
27 H11C H H11C N N N 0 8.983 -0.056 1.544
28 H12C H H12C N N N 0 7.37 -0.564 2.344
29 H2 H H2 N N N 0 7.863 0.199 -0.552
30 H32C H H32C N N N 0 5.466 -0.771 1.171
31 H171 H H171 N N N 0 -5.147 -0.748 -1.132
32 H172 H H172 N N N 0 -5.107 -1.379 0.532
33 H181 H H181 N N N 0 -5.23 1.568 -0.25
34 H182 H H182 N N N 0 -5.191 0.937 1.413
35 H21 H H21 N N N 0 -8.764 1.383 0.715