Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VBP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C10 N N N 0 -0.848 1.151 -1.642
2 C11 C C11 N Y N 0 -2.075 0.516 -1.041
3 C12 C C12 N Y N 0 -3.058 1.311 -0.48
4 C13 C C13 N Y N 0 -4.184 0.736 0.071
5 C14 C C14 N Y N 0 -4.331 -0.652 0.062
6 C15 C C15 N Y N 0 -3.335 -1.449 -0.506
7 C16 C C16 N Y N 0 -2.216 -0.861 -1.059
8 C17 C C17 N N N 0 -5.534 -1.275 0.651
9 C20 C C20 N N N 0 1.071 0.285 -0.421
10 C22 C C22 N N N 0 5.224 -1.567 0.079
11 N01 N N01 N N N 0 4.774 0.821 0.067
12 C02 C C02 R N N 0 4.195 -0.502 -0.2
13 C03 C C03 N N N 0 2.979 -0.719 0.703
14 N04 N N04 N N N 0 2.031 0.383 0.517
15 C05 C C05 N N N 0 2.129 1.501 1.3
16 C06 C C06 N N N 0 1.255 2.516 1.128
17 C07 C C07 N N N 0 0.25 2.4 0.138
18 O08 O O08 N N N 0 -0.549 3.303 -0.036
19 N09 N N09 N N N 0 0.187 1.282 -0.613
20 O18 O O18 N N N 0 -5.672 -2.615 0.64
21 O19 O O19 N N N 0 -6.398 -0.579 1.144
22 O21 O O21 N N N 0 1.006 -0.715 -1.109
23 O23 O O23 N N N 0 5.086 -2.79 -0.456
24 O24 O O24 N N N 0 6.173 -1.32 0.785
25 H10 H H10 N N N 0 -0.476 0.527 -2.454
26 H10A H H10A N N N 0 -1.102 2.138 -2.029
27 H12 H H12 N N N 0 -2.943 2.385 -0.474
28 H13 H H13 N N N 0 -4.951 1.359 0.509
29 H15 H H15 N N N 0 -3.442 -2.524 -0.516
30 H16 H H16 N N N 0 -1.445 -1.476 -1.498
31 HN01 H HN01 N N N 0 5.068 0.899 1.03
32 HN0A H HN0A N N N 0 5.54 1.014 -0.561
33 H02 H H02 N N N 0 3.887 -0.56 -1.244
34 H03 H H03 N N N 0 2.496 -1.661 0.443
35 H03A H H03A N N N 0 3.3 -0.75 1.744
36 H05 H H05 N N N 0 2.902 1.571 2.051
37 H06 H H06 N N N 0 1.321 3.404 1.74
38 HO18 H HO18 N N N 0 -6.476 -2.977 1.037
39 HO23 H HO23 N N N 0 5.772 -3.44 -0.248