Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VBV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2 O O1 N N N 0 5.671 -1.247 0.603
2 O3 O O2 N N N 0 -5.734 0.012 -1.398
3 O5 O O3 N N N 0 -5.669 -1.255 0.589
4 C7 C C1 N Y N 0 -1.441 -1.206 0.038
5 C C C2 N Y N 0 3.51 0.0 0.043
6 O O O4 N N N 0 5.671 1.252 0.595
7 C1 C C3 N Y N 0 2.822 -1.199 0.043
8 C10 C C4 N Y N 0 -2.821 1.199 0.045
9 C11 C C5 N Y N 0 -1.441 1.205 0.035
10 C2 C C6 N Y N 0 1.441 -1.205 0.042
11 C3 C C7 N Y N 0 0.742 0.0 0.04
12 C4 C C8 N Y N 0 1.441 1.205 0.04
13 C5 C C9 N Y N 0 2.821 1.199 0.041
14 C6 C C10 N Y N 0 -0.742 0.0 0.037
15 C8 C C11 N Y N 0 -2.821 -1.2 0.036
16 C9 C C12 N Y N 0 -3.51 0.0 0.04
17 O1 O O5 N N N 0 5.73 -0.004 -1.399
18 O4 O O6 N N N 0 -5.67 1.244 0.611
19 S S S1 N N N 0 5.272 0.0 0.052
20 S1 S S2 N N N 0 -5.272 -0.001 0.053
21 H1 H H1 N N N 0 -0.904 -2.142 0.035
22 H2 H H2 N N N 0 3.365 -2.133 0.044
23 H3 H H3 N N N 0 -3.365 2.132 0.048
24 H4 H H4 N N N 0 -0.904 2.142 0.035
25 H5 H H5 N N N 0 0.904 -2.142 0.042
26 H6 H H6 N N N 0 0.904 2.142 0.038
27 H7 H H7 N N N 0 3.364 2.133 0.041
28 H8 H H8 N N N 0 -3.364 -2.133 0.032
29 H9 H H9 N N N 0 -6.695 0.013 -1.505
30 H10 H H10 N N N 0 6.691 -0.004 -1.509