![spacer](http://www.ebi.ac.uk/inc/images/spacer.gif) |
PDBeChem : Atoms of Molecule
Molecule : VD3
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 72
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
O |
O |
O |
N |
N |
N |
0 |
-5.539 |
-3.548 |
-0.709 |
2 |
C1 |
C |
C1 |
N |
N |
N |
0 |
-7.115 |
-0.429 |
0.671 |
3 |
C2 |
C |
C2 |
N |
N |
N |
0 |
-6.855 |
-1.93 |
0.507 |
4 |
C3 |
C |
C3 |
S |
N |
N |
0 |
-5.68 |
-2.151 |
-0.447 |
5 |
C4 |
C |
C4 |
N |
N |
N |
0 |
-4.391 |
-1.618 |
0.185 |
6 |
C5 |
C |
C5 |
N |
N |
N |
0 |
-4.587 |
-0.149 |
0.505 |
7 |
C7 |
C |
C7 |
N |
N |
N |
0 |
-3.656 |
0.774 |
0.185 |
8 |
C8 |
C |
C8 |
N |
N |
N |
0 |
-2.421 |
0.366 |
-0.488 |
9 |
C9 |
C |
C9 |
N |
N |
N |
0 |
-1.502 |
1.278 |
-0.804 |
10 |
C10 |
C |
C10 |
N |
N |
N |
0 |
-1.68 |
2.758 |
-0.492 |
11 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-5.843 |
0.221 |
1.189 |
12 |
C11 |
C |
C11 |
N |
N |
N |
0 |
-0.448 |
3.313 |
0.219 |
13 |
C12 |
C |
C12 |
N |
N |
N |
0 |
0.852 |
2.92 |
-0.504 |
14 |
C13 |
C |
C13 |
R |
N |
N |
0 |
0.923 |
1.417 |
-0.558 |
15 |
C14 |
C |
C14 |
S |
N |
N |
0 |
-0.218 |
0.921 |
-1.492 |
16 |
C15 |
C |
C15 |
N |
N |
N |
0 |
0.11 |
-0.57 |
-1.603 |
17 |
C16 |
C |
C16 |
N |
N |
N |
0 |
1.656 |
-0.569 |
-1.769 |
18 |
C17 |
C |
C17 |
R |
N |
N |
0 |
2.162 |
0.757 |
-1.144 |
19 |
C18 |
C |
C18 |
N |
N |
N |
0 |
0.664 |
0.848 |
0.839 |
20 |
C19 |
C |
C19 |
N |
N |
N |
0 |
-5.863 |
1.087 |
2.202 |
21 |
C20 |
C |
C20 |
R |
N |
N |
0 |
3.183 |
0.469 |
-0.041 |
22 |
C21 |
C |
C21 |
N |
N |
N |
0 |
3.615 |
1.784 |
0.61 |
23 |
C22 |
C |
C22 |
N |
N |
N |
0 |
4.404 |
-0.226 |
-0.646 |
24 |
C23 |
C |
C23 |
N |
N |
N |
0 |
5.369 |
-0.626 |
0.472 |
25 |
C24 |
C |
C24 |
N |
N |
N |
0 |
6.59 |
-1.321 |
-0.133 |
26 |
C25 |
C |
C25 |
N |
N |
N |
0 |
7.556 |
-1.721 |
0.985 |
27 |
C26 |
C |
C26 |
N |
N |
N |
0 |
8.715 |
-2.525 |
0.394 |
28 |
C27 |
C |
C27 |
N |
N |
N |
0 |
8.101 |
-0.462 |
1.662 |
29 |
HO |
H |
HO |
N |
N |
N |
0 |
-4.793 |
-3.645 |
-1.316 |
30 |
H11 |
H |
1H1 |
N |
N |
N |
0 |
-7.388 |
0.004 |
-0.291 |
31 |
H12 |
H |
2H1 |
N |
N |
N |
0 |
-7.922 |
-0.273 |
1.387 |
32 |
H21 |
H |
1H2 |
N |
N |
N |
0 |
-7.746 |
-2.41 |
0.102 |
33 |
H22 |
H |
2H2 |
N |
N |
N |
0 |
-6.62 |
-2.366 |
1.478 |
34 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-5.869 |
-1.624 |
-1.383 |
35 |
H41 |
H |
1H4 |
N |
N |
N |
0 |
-3.563 |
-1.735 |
-0.514 |
36 |
H42 |
H |
2H4 |
N |
N |
N |
0 |
-4.177 |
-2.168 |
1.102 |
37 |
H7 |
H |
H7 |
N |
N |
N |
0 |
-3.823 |
1.814 |
0.424 |
38 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-2.254 |
-0.674 |
-0.727 |
39 |
H101 |
H |
1H10 |
N |
N |
N |
0 |
-1.835 |
3.304 |
-1.422 |
40 |
H102 |
H |
2H10 |
N |
N |
N |
0 |
-2.553 |
2.887 |
0.149 |
41 |
H111 |
H |
1H11 |
N |
N |
N |
0 |
-0.519 |
4.4 |
0.256 |
42 |
H112 |
H |
2H11 |
N |
N |
N |
0 |
-0.419 |
2.924 |
1.237 |
43 |
H121 |
H |
1H12 |
N |
N |
N |
0 |
0.846 |
3.318 |
-1.518 |
44 |
H122 |
H |
2H12 |
N |
N |
N |
0 |
1.711 |
3.311 |
0.042 |
45 |
H14 |
H |
H14 |
N |
N |
N |
0 |
-0.157 |
1.403 |
-2.468 |
46 |
H151 |
H |
1H15 |
N |
N |
N |
0 |
-0.372 |
-1.008 |
-2.476 |
47 |
H152 |
H |
2H15 |
N |
N |
N |
0 |
-0.18 |
-1.098 |
-0.694 |
48 |
H161 |
H |
1H16 |
N |
N |
N |
0 |
1.918 |
-0.608 |
-2.827 |
49 |
H162 |
H |
2H16 |
N |
N |
N |
0 |
2.09 |
-1.42 |
-1.244 |
50 |
H17 |
H |
H17 |
N |
N |
N |
0 |
2.603 |
1.393 |
-1.911 |
51 |
H181 |
H |
1H18 |
N |
N |
N |
0 |
-0.321 |
1.165 |
1.183 |
52 |
H182 |
H |
2H18 |
N |
N |
N |
0 |
0.702 |
-0.24 |
0.801 |
53 |
H183 |
H |
3H18 |
N |
N |
N |
0 |
1.425 |
1.215 |
1.528 |
54 |
H191 |
H |
1H19 |
N |
N |
N |
0 |
-6.799 |
1.341 |
2.677 |
55 |
H192 |
H |
2H19 |
N |
N |
N |
0 |
-4.943 |
1.534 |
2.549 |
56 |
H20 |
H |
H20 |
N |
N |
N |
0 |
2.732 |
-0.178 |
0.712 |
57 |
H211 |
H |
1H21 |
N |
N |
N |
0 |
4.066 |
2.431 |
-0.143 |
58 |
H212 |
H |
2H21 |
N |
N |
N |
0 |
2.745 |
2.28 |
1.041 |
59 |
H213 |
H |
3H21 |
N |
N |
N |
0 |
4.342 |
1.579 |
1.395 |
60 |
H221 |
H |
1H22 |
N |
N |
N |
0 |
4.906 |
0.454 |
-1.333 |
61 |
H222 |
H |
2H22 |
N |
N |
N |
0 |
4.084 |
-1.118 |
-1.186 |
62 |
H231 |
H |
1H23 |
N |
N |
N |
0 |
4.867 |
-1.307 |
1.159 |
63 |
H232 |
H |
2H23 |
N |
N |
N |
0 |
5.689 |
0.265 |
1.012 |
64 |
H241 |
H |
1H24 |
N |
N |
N |
0 |
7.093 |
-0.64 |
-0.82 |
65 |
H242 |
H |
2H24 |
N |
N |
N |
0 |
6.271 |
-2.212 |
-0.673 |
66 |
H25 |
H |
H25 |
N |
N |
N |
0 |
7.029 |
-2.329 |
1.72 |
67 |
H261 |
H |
1H26 |
N |
N |
N |
0 |
9.403 |
-2.809 |
1.191 |
68 |
H262 |
H |
2H26 |
N |
N |
N |
0 |
8.327 |
-3.422 |
-0.088 |
69 |
H263 |
H |
3H26 |
N |
N |
N |
0 |
9.243 |
-1.916 |
-0.34 |
70 |
H271 |
H |
1H27 |
N |
N |
N |
0 |
7.274 |
0.111 |
2.083 |
71 |
H272 |
H |
2H27 |
N |
N |
N |
0 |
8.788 |
-0.746 |
2.459 |
72 |
H273 |
H |
3H27 |
N |
N |
N |
0 |
8.628 |
0.147 |
0.928 |
|