Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VGB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CBA C CBA N N N 0 -1.872 5.396 0.069
2 CAN C CAN N N N 0 -2.512 4.23 0.825
3 CAL C CAL N N N 0 -2.328 2.959 0.037
4 OAM O OAM N N N 0 -1.742 2.984 -1.025
5 NAK N NAK N N N 0 -2.813 1.795 0.512
6 CAC C CAC S N N 0 -2.634 0.559 -0.255
7 CAB C CAB R N N 0 -3.736 -0.442 0.115
8 OAG O OAG N N N 0 -4.979 -0.012 -0.442
9 CAA C CAA R N N 0 -3.367 -1.817 -0.453
10 OAH O OAH N N N 0 -4.466 -2.713 -0.284
11 CAF C CAF R N N 0 -2.145 -2.36 0.293
12 CAI C CAI N N N 0 -1.62 -3.606 -0.423
13 OAJ O OAJ N N N 0 -0.554 -4.179 0.336
14 NAE N NAE N Y N 1 -1.099 -1.33 0.316
15 CAQ C CAQ N Y N 0 0.201 -1.53 0.577
16 CAD C CAD N Y N 0 -1.297 -0.058 0.08
17 NAO N NAO N Y N 0 -0.12 0.592 0.187
18 CAP C CAP N Y N 0 0.83 -0.341 0.503
19 CAR C CAR N N N 0 2.299 -0.088 0.724
20 CAS C CAS N N N 0 3.063 -0.344 -0.577
21 CAT C CAT N Y N 0 4.532 -0.09 -0.355
22 CAU C CAU N Y N 0 5.356 -1.12 0.06
23 CAV C CAV N Y N 0 6.703 -0.887 0.264
24 CAW C CAW N Y N 0 7.227 0.375 0.051
25 CAX C CAX N Y N 0 6.403 1.404 -0.366
26 CAY C CAY N Y N 0 5.056 1.17 -0.573
27 HBA H HBA N N N 0 -2.348 5.501 -0.906
28 HBAA H HBAA N N N 0 -2.006 6.315 0.64
29 HBAB H HBAB N N N 0 -0.808 5.203 -0.065
30 HAN H HAN N N N 0 -2.036 4.125 1.8
31 HANA H HANA N N N 0 -3.576 4.423 0.959
32 HNAK H HNAK N N N 0 -3.281 1.775 1.361
33 HAC H HAC N N N 0 -2.681 0.779 -1.321
34 HAB H HAB N N N 0 -3.823 -0.504 1.199
35 HOAG H HOAG N N N 0 -5.722 -0.6 -0.248
36 HAA H HAA N N N 0 -3.134 -1.722 -1.513
37 HOAH H HOAH N N N 0 -5.277 -2.43 -0.729
38 HAF H HAF N N N 0 -2.426 -2.618 1.314
39 HAI H HAI N N N 0 -2.426 -4.333 -0.524
40 HAIA H HAIA N N N 0 -1.254 -3.33 -1.412
41 HOAJ H HOAJ N N N 0 -0.172 -4.975 -0.059
42 HAQ H HAQ N N N 0 0.663 -2.478 0.808
43 HNAO H HNAO N N N 0 0.025 1.543 0.063
44 HAR H HAR N N N 0 2.447 0.947 1.034
45 HARA H HARA N N N 0 2.67 -0.756 1.501
46 HAS H HAS N N N 0 2.915 -1.379 -0.887
47 HASA H HASA N N N 0 2.692 0.324 -1.354
48 HAU H HAU N N N 0 4.947 -2.105 0.227
49 HAV H HAV N N N 0 7.347 -1.691 0.589
50 HAW H HAW N N N 0 8.279 0.557 0.21
51 HAX H HAX N N N 0 6.811 2.389 -0.532
52 HAY H HAY N N N 0 4.413 1.973 -0.902