Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VGW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -2.747 -1.505 -0.438
2 C2 C C2 N Y N 0 -1.375 -1.371 -0.309
3 C3 C C3 N Y N 0 -0.585 -2.51 -0.147
4 C4 C C4 N Y N 0 -1.183 -3.782 -0.117
5 N1 N N1 N N N 0 1.504 -1.181 -0.031
6 C5 C C5 N Y N 0 -2.562 -3.897 -0.248
7 C6 C C6 N N N 0 0.943 -4.802 0.17
8 C7 C C7 N N N 0 1.596 -3.563 0.147
9 C8 C C8 N N N 0 0.875 -2.408 -0.007
10 C9 C C9 N N N 0 2.963 -1.103 0.077
11 C10 C C10 N Y N 0 3.395 0.339 0.004
12 C11 C C11 N Y N 0 2.822 2.554 -0.2
13 C12 C C12 N Y N 0 4.163 2.897 -0.126
14 C13 C C13 N Y N 0 5.096 1.883 0.022
15 C14 C C14 N N N 0 4.595 4.339 -0.199
16 N2 N N2 N Y N 0 2.48 1.277 -0.132
17 C15 C C15 N N N 0 5.534 4.737 -1.34
18 C16 C C16 N N N 0 6.064 4.651 0.094
19 C17 C C17 N N N 0 3.408 -1.702 1.413
20 C18 C C18 N N N 0 3.602 -1.886 -1.072
21 C19 C C19 N N N 0 -1.018 -6.228 0.074
22 C20 C C20 N Y N 0 -3.279 0.78 0.124
23 C21 C C21 N Y N 0 -2.322 0.779 1.139
24 C22 C C22 N Y N 0 -2.086 1.94 1.843
25 N3 N N3 N Y N 0 4.679 0.628 0.082
26 CL CL CL1 N N N 0 -4.502 4.601 0.334
27 C23 C C23 N Y N 0 -3.663 3.11 0.628
28 N5 N N4 N Y N 0 -2.748 3.051 1.575
29 C24 C C24 N Y N 0 -3.964 1.983 -0.141
30 C25 C C25 N N N 0 -4.957 2.046 -1.17
31 N6 N N5 N N N 0 -5.745 2.095 -1.987
32 N4 N N6 N N N 0 -3.545 -0.367 -0.607
33 O O O1 N N N 0 1.604 -5.818 0.309
34 N N N7 N N N 0 -0.391 -4.904 0.043
35 C C C26 N Y N 0 -3.335 -2.767 -0.408
36 H1 H H1 N N N 0 -0.92 -0.393 -0.333
37 H2 H H2 N N N 0 0.98 -0.37 -0.119
38 H3 H H3 N N N 0 -3.028 -4.871 -0.226
39 H4 H H4 N N N 0 2.67 -3.517 0.252
40 H5 H H5 N N N 0 2.067 3.318 -0.31
41 H6 H H6 N N N 0 6.149 2.113 0.083
42 H7 H H7 N N N 0 3.852 5.069 0.12
43 H8 H H8 N N N 0 5.839 3.957 -2.037
44 H9 H H9 N N N 0 5.408 5.73 -1.771
45 H10 H H10 N N N 0 6.287 5.588 0.605
46 H11 H H11 N N N 0 6.718 3.814 0.339
47 H12 H H12 N N N 0 2.967 -2.691 1.532
48 H13 H H13 N N N 0 4.495 -1.784 1.429
49 H14 H H14 N N N 0 3.08 -1.056 2.227
50 H15 H H15 N N N 0 3.404 -1.375 -2.014
51 H16 H H16 N N N 0 4.678 -1.951 -0.912
52 H17 H H17 N N N 0 3.178 -2.89 -1.107
53 H18 H H18 N N N 0 -1.071 -6.629 -0.938
54 H19 H H19 N N N 0 -0.424 -6.896 0.699
55 H20 H H20 N N N 0 -2.024 -6.144 0.485
56 H21 H H21 N N N 0 -1.772 -0.122 1.37
57 H22 H H22 N N N 0 -1.345 1.941 2.629
58 H23 H H23 N N N 0 -4.284 -0.382 -1.234
59 H24 H H24 N N N 0 -4.406 -2.861 -0.509