Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VH7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C17 C C1 N N N 0 4.202 1.276 0.81
2 C20 C C2 N N N 0 3.305 0.119 0.364
3 C22 C C3 N N N 0 3.811 -0.433 -0.97
4 C01 C C4 N N N 0 8.45 0.843 0.375
5 C05 C C5 N N N 0 7.578 -0.281 -0.19
6 C06 C C6 N N N 0 7.593 -1.47 0.772
7 C12 C C7 N N N 0 6.143 0.222 -0.357
8 C14 C C8 N N N 0 5.637 0.774 0.977
9 C25 C C9 N N N 0 5.246 -0.935 -0.803
10 C30 C C10 N N N 0 0.898 -0.259 0.316
11 C32 C C11 N Y N 0 -0.486 0.226 0.155
12 C33 C C12 N Y N 0 -0.731 1.596 -0.118
13 C35 C C13 N Y N 0 -2.007 2.031 -0.265
14 C37 C C14 N Y N 0 -3.073 1.113 -0.144
15 C39 C C15 N Y N 0 -4.982 0.079 -0.034
16 C48 C C20 N Y N 0 -8.689 0.637 -0.312
17 C40 C C16 N Y N 0 -4.016 -0.855 0.183
18 C43 C C17 N Y N 0 -1.531 -0.645 0.262
19 C45 C C18 N Y N 0 -6.444 -0.172 -0.053
20 C46 C C19 N Y N 0 -7.33 0.876 -0.295
21 C50 C C21 N Y N 0 -9.172 -0.64 -0.089
22 C52 C C22 N Y N 0 -8.297 -1.684 0.152
23 C54 C C23 N Y N 0 -6.936 -1.457 0.164
24 N28 N N1 N N N 0 1.931 0.601 0.204
25 N38 N N2 N Y N 0 -4.385 1.266 -0.234
26 N42 N N3 N Y N 0 -2.811 -0.209 0.12
27 O10 O O1 N N N 0 8.091 -0.689 -1.46
28 O31 O O2 N N N 0 1.108 -1.433 0.55
29 H18 H H1 N N N 0 4.178 2.065 0.058
30 H19 H H2 N N N 0 3.841 1.67 1.76
31 H21 H H3 N N N 0 3.329 -0.669 1.116
32 H23 H H4 N N N 0 3.172 -1.257 -1.288
33 H24 H H5 N N N 0 3.787 0.356 -1.722
34 H04 H H6 N N N 0 8.439 1.69 -0.311
35 H03 H H7 N N N 0 8.058 1.154 1.343
36 H02 H H8 N N N 0 9.472 0.485 0.494
37 H07 H H9 N N N 0 7.202 -1.159 1.741
38 H09 H H10 N N N 0 6.973 -2.271 0.37
39 H08 H H11 N N N 0 8.616 -1.829 0.891
40 H13 H H12 N N N 0 6.119 1.01 -1.109
41 H26 H H16 N N N 0 5.606 -1.329 -1.754
42 H15 H H13 N N N 0 6.276 1.598 1.295
43 H16 H H14 N N N 0 5.661 -0.015 1.729
44 H27 H H15 N N N 0 5.27 -1.724 -0.051
45 H34 H H17 N N N 0 0.094 2.288 -0.208
46 H36 H H18 N N N 0 -2.205 3.072 -0.473
47 H41 H H19 N N N 0 -4.171 -1.906 0.376
48 H44 H H20 N N N 0 -1.341 -1.689 0.466
49 H47 H H21 N N N 0 -6.954 1.873 -0.468
50 H49 H H22 N N N 0 -9.377 1.448 -0.498
51 H51 H H23 N N N 0 -10.237 -0.823 -0.103
52 H53 H H24 N N N 0 -8.68 -2.679 0.325
53 H55 H H25 N N N 0 -6.253 -2.273 0.352
54 H29 H H26 N N N 0 1.763 1.538 0.017
55 H11 H H27 N N N 0 7.587 -1.4 -1.878