Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VK1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 R N N 0 3.31 0.59 -0.486
2 C15 C C2 N N N 0 1.713 2.201 0.356
3 C17 C C3 N Y N 0 0.532 -2.127 0.014
4 C03 C C4 N N N 0 -2.73 -0.442 -0.334
5 C04 C C5 N N N 0 -3.652 -1.63 -0.052
6 C05 C C6 N N N 0 -3.509 -1.094 -1.478
7 C06 C C7 N Y N 0 -1.244 -0.685 -0.276
8 C07 C C8 N Y N 0 -0.358 0.357 -0.47
9 C08 C C9 N Y N 0 1.011 0.088 -0.408
10 C11 C C10 N N N 0 3.54 0.04 0.923
11 C12 C C11 N N N 0 4.296 1.729 -0.758
12 C14 C C12 N N N 0 2.716 3.323 0.075
13 C19 C C13 N N N 0 2.895 -3.482 0.279
14 N01 N N1 N N N 0 -2.392 1.611 1.562
15 N09 N N2 N N N 0 1.936 1.102 -0.595
16 N16 N N3 N Y N 0 1.414 -1.155 -0.166
17 N20 N N4 N Y N 0 -0.773 -1.901 -0.039
18 N21 N N5 N N N 0 -4.716 1.101 0.614
19 O13 O O1 N N N 0 4.044 2.8 0.155
20 O22 O O2 N N N 0 -3.141 2.228 -0.74
21 S02 S S1 R N N 0 -3.277 1.195 0.226
22 S18 S S2 N N N 0 1.107 -3.763 0.325
23 H1 H H1 N N N 0 3.461 -0.205 -1.217
24 H2 H H2 N N N 0 1.851 1.835 1.373
25 H3 H H3 N N N 0 0.698 2.582 0.241
26 H4 H H4 N N N 0 -3.183 -2.588 0.175
27 H5 H H5 N N N 0 -4.587 -1.429 0.47
28 H6 H H6 N N N 0 -4.35 -0.54 -1.894
29 H7 H H7 N N N 0 -2.946 -1.699 -2.189
30 H8 H H8 N N N 0 -0.716 1.357 -0.665
31 H9 H H9 N N N 0 2.834 -0.767 1.117
32 H10 H H10 N N N 0 4.558 -0.339 1.003
33 H11 H H11 N N N 0 3.39 0.837 1.652
34 H12 H H12 N N N 0 5.316 1.367 -0.623
35 H13 H H13 N N N 0 4.168 2.084 -1.781
36 H14 H H14 N N N 0 2.542 3.725 -0.923
37 H15 H H15 N N N 0 2.591 4.115 0.814
38 H16 H H16 N N N 0 3.176 -3.092 -0.699
39 H17 H H17 N N N 0 3.169 -2.761 1.05
40 H18 H H18 N N N 0 3.416 -4.422 0.459
41 H19 H H19 N N N 0 -2.452 1.076 2.369
42 H20 H H20 N N N 0 -1.814 2.389 1.538
43 H21 H H21 N N N 0 -4.989 1.311 1.521