Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VKW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -7.009 -1.291 -0.082
2 C2 C C2 N Y N 0 -7.124 -0.634 1.084
3 C3 C C3 N Y N 0 -5.344 0.133 0.116
4 C7 C C4 N N N 0 -2.689 2.643 0.619
5 C8 C C5 N N N 0 -3.917 1.799 0.968
6 C9 C C6 N N N 0 -0.322 2.534 0.115
7 C10 C C7 N N N 0 0.889 1.6 0.119
8 C11 C C8 N N N 0 2.158 2.409 -0.156
9 C12 C C9 N N N 0 3.352 1.489 -0.153
10 C13 C C10 N N N 0 5.683 1.241 -0.383
11 C14 C C11 N Y N 0 5.493 -0.197 -0.142
12 C15 C C12 N Y N 0 6.562 -1.09 -0.134
13 C16 C C13 N Y N 0 6.328 -2.428 0.097
14 C19 C C14 N Y N 0 4.179 -0.663 0.085
15 CL CL CL1 N N N 0 2.361 -2.621 0.598
16 C18 C C15 N Y N 0 3.967 -2.024 0.317
17 C17 C C16 N Y N 0 5.038 -2.891 0.321
18 O O O1 N N N 0 6.789 1.708 -0.586
19 N4 N N1 N N N 0 4.58 2.025 -0.376
20 N5 N N2 N N N 0 3.154 0.225 0.067
21 N3 N N3 N N N 0 -1.541 1.757 0.379
22 C6 C C17 N N N 0 -1.819 0.824 -0.721
23 C5 C C18 N N N 0 -3.048 -0.02 -0.373
24 N2 N N4 N N N 0 -4.196 0.866 -0.133
25 N N N5 N Y N 0 -6.099 0.229 1.185
26 N1 N N6 N Y N 0 -5.877 -0.814 -0.703
27 C4 C C19 N N N 0 -5.351 -1.238 -2.002
28 C C C20 N N N 0 -7.939 -2.354 -0.608
29 H1 H H1 N N N 0 -7.906 -0.775 1.815
30 H2 H H2 N N N 0 -2.891 3.226 -0.279
31 H3 H H3 N N N 0 -2.463 3.315 1.447
32 H4 H H4 N N N 0 -3.724 1.236 1.881
33 H5 H H5 N N N 0 -4.776 2.452 1.117
34 H6 H H6 N N N 0 -0.199 3.291 0.89
35 H7 H H7 N N N 0 -0.404 3.019 -0.857
36 H8 H H8 N N N 0 0.971 1.115 1.091
37 H9 H H9 N N N 0 0.766 0.842 -0.656
38 H10 H H10 N N N 0 2.076 2.894 -1.129
39 H11 H H11 N N N 0 2.281 3.166 0.618
40 H12 H H12 N N N 0 7.568 -0.736 -0.308
41 H13 H H13 N N N 0 7.155 -3.123 0.104
42 H14 H H14 N N N 0 4.873 -3.943 0.5
43 H15 H H15 N N N 0 4.667 2.979 -0.531
44 H17 H H17 N N N 0 -2.012 1.387 -1.635
45 H18 H H18 N N N 0 -0.96 0.171 -0.871
46 H19 H H19 N N N 0 -3.274 -0.692 -1.2
47 H20 H H20 N N N 0 -2.845 -0.604 0.525
48 H21 H H21 N N N 0 -4.654 -2.064 -1.86
49 H22 H H22 N N N 0 -6.173 -1.563 -2.639
50 H23 H H23 N N N 0 -4.833 -0.403 -2.475
51 H24 H H24 N N N 0 -8.728 -1.887 -1.199
52 H25 H H25 N N N 0 -7.38 -3.049 -1.234
53 H26 H H26 N N N 0 -8.383 -2.895 0.228