Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VL1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 86


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -7.774 1.426 0.227
2 C13 C C2 N Y N 0 -6.301 2.703 -1.322
3 C15 C C3 N Y N 0 -3.97 2.987 -0.835
4 C17 C C4 N Y N 0 -5.348 1.743 0.684
5 C22 C C5 N Y N 0 0.764 2.598 -0.908
6 C24 C C6 N Y N 0 1.86 0.468 -0.798
7 C26 C C7 N Y N 0 3.103 2.497 -0.385
8 C28 C C8 N Y N 0 4.285 0.307 -0.247
9 C01 C C9 N N N 0 -8.401 -3.961 -0.704
10 C03 C C10 N N N 0 -7.405 -4.824 1.327
11 C04 C C11 N N N 0 -8.186 -2.534 1.24
12 C05 C C12 N N N 0 -6.907 -1.974 0.612
13 C06 C C13 N N N 0 -6.663 -0.556 1.138
14 C08 C C14 N N N 0 -9.161 -0.238 1.368
15 C09 C C15 N N N 0 -9.376 -1.66 0.84
16 C12 C C16 N Y N 0 -6.452 1.966 -0.144
17 C14 C C17 N Y N 0 -5.066 3.206 -1.664
18 C16 C C18 N Y N 0 -4.118 2.259 0.342
19 C19 C C19 N N N 0 -1.602 2.81 -0.881
20 C23 C C20 N Y N 0 0.72 1.212 -1.01
21 C25 C C21 N Y N 0 3.059 1.106 -0.481
22 C27 C C22 N Y N 0 1.96 3.237 -0.597
23 C30 C C23 N Y N 0 5.345 -1.735 -0.138
24 C32 C C24 N Y N 0 6.528 0.199 0.266
25 C35 C C25 N N N 0 8.264 0.32 1.844
26 C36 C C26 N N N 0 9.606 1.003 2.123
27 C38 C C27 N N N 0 8.883 2.952 0.933
28 C39 C C28 N N N 0 7.534 2.289 0.641
29 C41 C C29 N N N 0 6.281 -3.593 -1.23
30 C42 C C30 N N N 0 6.244 -5.123 -1.271
31 C44 C C31 N N N 0 3.936 -5.102 -0.631
32 C45 C C32 N N N 0 3.95 -3.572 -0.583
33 N02 N N1 N N N 0 -8.404 -3.906 0.764
34 N07 N N2 N N N 0 -7.863 0.254 0.886
35 N18 N N3 N N N 0 -2.721 3.498 -1.184
36 N21 N N4 N N N 0 -0.392 3.351 -1.123
37 N29 N N5 N Y N 0 4.244 -1.019 -0.343
38 N31 N N6 N Y N 0 6.487 -1.125 0.164
39 N33 N N7 N Y N 0 5.428 0.916 0.056
40 N34 N N8 N N N 0 7.714 0.831 0.58
41 N40 N N9 N N N 0 5.304 -3.11 -0.243
42 O11 O O1 N N N 0 -8.784 2.04 -0.06
43 O20 O O2 N N N 0 -1.686 1.701 -0.389
44 O37 O O3 N N N 0 9.417 2.421 2.148
45 O43 O O4 N N N 0 4.914 -5.554 -1.572
46 H131 H H1 N N N 0 -7.151 2.873 -1.965
47 H171 H H2 N N N 0 -5.462 1.179 1.597
48 H241 H H3 N N N 0 1.824 -0.609 -0.873
49 H261 H H4 N N N 0 4.03 2.993 -0.14
50 H012 H H5 N N N 0 -8.565 -4.988 -1.03
51 H013 H H6 N N N 0 -9.196 -3.325 -1.093
52 H011 H H7 N N N 0 -7.44 -3.61 -1.079
53 H032 H H8 N N N 0 -7.477 -4.816 2.414
54 H033 H H9 N N N 0 -7.59 -5.833 0.958
55 H031 H H10 N N N 0 -6.408 -4.505 1.026
56 H041 H H11 N N N 0 -8.086 -2.537 2.325
57 H052 H H12 N N N 0 -6.062 -2.611 0.878
58 H051 H H13 N N N 0 -7.015 -1.947 -0.472
59 H062 H H14 N N N 0 -6.464 -0.592 2.209
60 H061 H H15 N N N 0 -5.81 -0.116 0.621
61 H082 H H16 N N N 0 -9.956 0.412 1.003
62 H081 H H17 N N N 0 -9.169 -0.248 2.458
63 H091 H H18 N N N 0 -9.462 -1.635 -0.246
64 H092 H H19 N N N 0 -10.29 -2.072 1.268
65 H141 H H20 N N N 0 -4.948 3.771 -2.576
66 H161 H H21 N N N 0 -3.267 2.099 0.987
67 H231 H H22 N N N 0 -0.209 0.719 -1.255
68 H271 H H23 N N N 0 1.993 4.314 -0.523
69 H352 H H24 N N N 0 8.413 -0.757 1.767
70 H351 H H25 N N N 0 7.571 0.535 2.657
71 H362 H H26 N N N 0 9.991 0.67 3.087
72 H361 H H27 N N N 0 10.316 0.744 1.338
73 H382 H H28 N N N 0 9.573 2.75 0.113
74 H381 H H29 N N N 0 8.746 4.028 1.035
75 H392 H H30 N N N 0 6.829 2.536 1.435
76 H391 H H31 N N N 0 7.15 2.649 -0.313
77 H411 H H32 N N N 0 7.28 -3.261 -0.945
78 H412 H H33 N N N 0 6.033 -3.196 -2.214
79 H421 H H34 N N N 0 6.926 -5.483 -2.041
80 H422 H H35 N N N 0 6.545 -5.521 -0.302
81 H441 H H36 N N N 0 4.17 -5.5 0.357
82 H442 H H37 N N N 0 2.949 -5.448 -0.938
83 H451 H H38 N N N 0 3.663 -3.175 -1.557
84 H452 H H39 N N N 0 3.246 -3.225 0.174
85 H181 H H41 N N N 0 -2.657 4.349 -1.645
86 H211 H H42 N N N 0 -0.324 4.262 -1.447