Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VM7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C1 N N N 0 4.919 -0.458 -0.032
2 O O O1 N N N 0 4.924 -1.673 -0.043
3 C1 C C2 N Y N 0 3.637 0.275 -0.005
4 C10 C C3 N Y N 0 -0.067 -1.857 0.0
5 C11 C C4 N Y N 0 1.235 1.668 0.045
6 C12 C C5 N Y N 0 2.432 2.358 0.038
7 C13 C C6 N Y N 0 3.63 1.672 0.013
8 C2 C C7 N Y N 0 2.431 -0.424 -0.004
9 C3 C C8 N Y N 0 1.229 0.274 0.021
10 C4 C C9 N Y N 0 -0.059 -0.463 0.023
11 C5 C C10 N Y N 0 -1.264 0.235 0.048
12 C6 C C11 N Y N 0 -2.459 -0.456 0.049
13 C7 C C12 N N N 0 -4.396 0.682 -1.667
14 C8 C C13 N Y N 0 -2.462 -1.839 0.026
15 C9 C C14 N Y N 0 -1.268 -2.537 -0.004
16 O1 O O2 N N N 0 -4.9 -0.481 0.681
17 O2 O O3 N N N 0 -3.662 1.661 0.704
18 O3 O O4 N N N 0 6.083 0.219 -0.039
19 S S S1 N N N 0 -3.985 0.425 0.081
20 H7 H H1 N N N 0 0.864 -2.403 -0.02
21 H8 H H2 N N N 0 0.302 2.211 0.064
22 H9 H H3 N N N 0 2.431 3.438 0.052
23 H10 H H4 N N N 0 4.563 2.216 0.009
24 H H H5 N N N 0 2.431 -1.504 -0.023
25 H1 H H6 N N N 0 -1.264 1.315 0.066
26 H3 H H7 N N N 0 -3.603 1.257 -2.146
27 H4 H H8 N N N 0 -4.494 -0.284 -2.163
28 H2 H H9 N N N 0 -5.337 1.227 -1.743
29 H5 H H10 N N N 0 -3.399 -2.375 0.027
30 H6 H H11 N N N 0 -1.275 -3.617 -0.022
31 H11 H H12 N N N 0 6.896 -0.304 -0.057