Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VOG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -1.591 0.809 0.446
2 O1 O O1 N N N 0 -0.827 1.37 -0.624
3 C2 C C2 S N N 0 -2.264 -0.48 -0.03
4 O2 O O2 N N N 0 -3.128 -0.188 -1.131
5 C3 C C3 R N N 0 -1.195 -1.48 -0.473
6 O3 O O3 N N N 0 -1.824 -2.684 -0.917
7 C4 C C4 S N N 0 -0.27 -1.793 0.705
8 O4 O O4 N N N 0 0.728 -2.728 0.292
9 C5 C C5 S N N 0 0.403 -0.504 1.181
10 C6 C C6 N N N 0 -0.666 0.496 1.624
11 C7 C C7 N N N 0 -2.66 1.81 0.888
12 O7 O O5 N N N 0 -3.592 2.013 -0.176
13 N N N1 N N N 0 1.189 0.072 0.082
14 C8 C C8 N N N 0 2.303 0.878 0.598
15 C9 C C9 N N N 0 3.507 -0.028 0.864
16 O9 O O6 N N N 0 3.951 -0.604 -0.366
17 C10 C C10 N N N 0 2.684 1.942 -0.434
18 O10 O O7 N N N 0 3.189 1.306 -1.609
19 H1 H H1 N N N 0 -1.35 1.594 -1.406
20 H2 H H2 N N N 0 -2.847 -0.908 0.785
21 H3 H H3 N N N 0 -3.589 -0.96 -1.485
22 H4 H H4 N N N 0 -0.612 -1.053 -1.288
23 H5 H H5 N N N 0 -1.205 -3.365 -1.214
24 H6 H H6 N N N 0 -0.853 -2.221 1.521
25 H7 H H7 N N N 0 0.373 -3.57 -0.023
26 H8 H H8 N N N 0 1.062 -0.727 2.021
27 H9 H H9 N N N 0 -0.187 1.414 1.963
28 H10 H H10 N N N 0 -1.249 0.068 2.44
29 H11 H H11 N N N 0 -3.185 1.419 1.76
30 H12 H H12 N N N 0 -2.187 2.758 1.143
31 H13 H H13 N N N 0 -4.3 2.638 0.035
32 H14 H H14 N N N 0 1.521 -0.648 -0.541
33 H16 H H16 N N N 0 2.002 1.363 1.526
34 H17 H H17 N N N 0 4.314 0.559 1.303
35 H18 H H18 N N N 0 3.219 -0.822 1.553
36 H19 H H19 N N N 0 4.713 -1.191 -0.273
37 H20 H H20 N N N 0 1.804 2.531 -0.689
38 H21 H H21 N N N 0 3.45 2.595 -0.016
39 H22 H H22 N N N 0 3.451 1.921 -2.308