Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VOI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -5.39 -0.106 0.402
2 C10 C C2 N Y N 0 1.481 -0.52 -1.898
3 C11 C C3 N Y N 0 0.516 0.079 -1.102
4 C12 C C4 N Y N 0 2.163 1.459 -0.201
5 C13 C C5 N Y N 0 2.596 2.658 -0.686
6 C14 C C6 N Y N 0 3.957 3.0 -0.581
7 C15 C C7 N Y N 0 4.834 2.155 -0.007
8 C16 C C8 N Y N 0 3.095 0.577 0.401
9 C17 C C9 N Y N 0 2.95 -0.672 0.967
10 C18 C C10 N Y N 0 4.228 -1.075 1.411
11 C19 C C11 N N N 0 4.551 -2.31 2.061
12 C2 C C12 N N N 0 -7.737 -0.114 1.058
13 C20 C C13 N Y N 0 5.109 -0.058 1.1
14 C3 C C14 N N N 0 -6.094 1.548 2.047
15 C4 C C15 N N N 0 -3.993 0.451 0.494
16 C5 C C16 N N N 0 -3.07 -0.328 -0.446
17 C6 C C17 N Y N 0 -0.796 -0.384 -1.137
18 C7 C C18 N Y N 0 -1.132 -1.442 -1.966
19 C8 C C19 N Y N 0 -0.165 -2.036 -2.756
20 C9 C C20 N Y N 0 1.138 -1.572 -2.726
21 N1 N N1 N N N 0 -6.378 0.427 1.147
22 N2 N N2 N Y N 0 4.422 0.94 0.489
23 N3 N N3 N N N 0 4.807 -3.289 2.576
24 O1 O O1 N N N 0 -5.626 -1.031 -0.346
25 O2 O O2 N N N 0 -1.745 0.2 -0.359
26 O3 O O3 N N N 0 0.851 1.117 -0.29
27 H1 H H1 N N N 0 2.5 -0.162 -1.873
28 H2 H H2 N N N 0 1.899 3.341 -1.148
29 H3 H H3 N N N 0 4.301 3.949 -0.964
30 H4 H H4 N N N 0 5.875 2.435 0.064
31 H5 H H5 N N N 0 2.033 -1.235 1.055
32 H6 H H6 N N N 0 -7.86 -0.91 1.792
33 H7 H H7 N N N 0 -8.458 0.679 1.257
34 H8 H H8 N N N 0 -7.903 -0.514 0.058
35 H9 H H9 N N N 0 6.169 -0.057 1.309
36 H10 H H10 N N N 0 -5.038 1.811 1.978
37 H11 H H11 N N N 0 -6.701 2.407 1.76
38 H12 H H12 N N N 0 -6.332 1.261 3.071
39 H13 H H13 N N N 0 -4.001 1.502 0.207
40 H14 H H14 N N N 0 -3.631 0.356 1.518
41 H15 H H15 N N N 0 -3.062 -1.379 -0.159
42 H16 H H16 N N N 0 -3.432 -0.234 -1.47
43 H17 H H17 N N N 0 -2.149 -1.804 -1.995
44 H18 H H18 N N N 0 -0.428 -2.861 -3.402
45 H19 H H19 N N N 0 1.89 -2.038 -3.345