Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VPM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAA C CAA N N N 0 2.85 -0.068 -0.743
2 CAK C CAK N N N 0 1.685 -0.997 -0.394
3 CAB C CAB N N N 0 1.891 -1.567 1.011
4 CAL C CAL S N N 0 0.374 -0.211 -0.438
5 CAJ C CAJ N N N 0 0.477 0.989 0.467
6 OAF O OAF N N N 0 0.711 0.823 1.778
7 OAD O OAD N N N 0 0.349 2.102 0.013
8 OAG O OAG N N N 0 0.124 0.223 -1.777
9 CAH C CAH N N N 0 -0.774 -1.107 0.031
10 CAI C CAI N N N 0 -2.066 -0.332 -0.013
11 OAE O OAE N N N 0 -2.068 0.819 -0.382
12 OAC O OAC N N N 0 -3.214 -0.92 0.357
13 H1 H H1 N N N 0 2.891 0.749 -0.022
14 H2 H H2 N N N 0 3.784 -0.628 -0.711
15 H3 H H3 N N N 0 2.703 0.338 -1.744
16 H4 H H4 N N N 0 1.644 -1.814 -1.115
17 H5 H H5 N N N 0 1.933 -0.75 1.732
18 H6 H H6 N N N 0 1.062 -2.229 1.26
19 H7 H H7 N N N 0 2.825 -2.127 1.043
20 H8 H H8 N N N 0 0.769 1.622 2.319
21 H9 H H9 N N N 0 0.045 -0.499 -2.416
22 H10 H H10 N N N 0 -0.849 -1.974 -0.624
23 H11 H H11 N N N 0 -0.583 -1.437 1.052
24 H12 H H12 N N N 0 -4.017 -0.383 0.312