Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VYG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -5.147 0.917 2.286
2 C2 C C2 N Y N 0 -5.791 0.739 0.935
3 C3 C C3 N Y N 0 -7.687 0.503 -0.356
4 C4 C C4 N Y N 0 -5.652 0.486 -1.439
5 C5 C C5 N Y N 0 -5.011 0.651 -0.205
6 C6 C C6 N N N 0 -2.942 -0.512 -0.039
7 C7 C C7 N N N 0 -1.437 -0.235 -0.043
8 N1 N N1 N N N 0 -9.069 0.424 -0.426
9 C8 C C8 N N N 0 -0.675 -1.559 0.053
10 C9 C C9 N Y N 0 1.555 -2.376 0.13
11 C10 C C10 N Y N 0 1.806 -4.665 0.275
12 C11 C C11 N Y N 0 3.183 -4.557 0.281
13 N2 N N2 N Y N 0 -6.979 0.42 -1.472
14 C12 C C12 N Y N 0 3.767 -3.301 0.207
15 C13 C C13 N Y N 0 2.937 -2.189 0.13
16 C14 C C14 N N N 0 4.245 -0.726 -1.188
17 C15 C C15 N N N 0 4.7 0.731 -1.307
18 C16 C C16 N N N 0 5.566 1.091 -0.096
19 C17 C C17 N N N 0 5.974 2.563 -0.179
20 C18 C C18 N N N 0 4.762 0.853 1.185
21 C19 C C19 N N N 0 4.306 -0.607 1.232
22 O1 O O1 N N N 0 0.73 -1.3 0.049
23 N3 N N3 N N N 0 -4.913 0.393 -2.61
24 N N N4 N Y N 0 -7.11 0.659 0.825
25 C C C20 N N N 0 -5.063 2.408 2.618
26 O O O2 N N N 0 -3.654 0.724 -0.129
27 F F F1 N N N 0 6.765 2.89 0.927
28 F1 F F2 N N N 0 6.703 2.779 -1.354
29 F2 F F3 N N N 0 4.828 3.365 -0.187
30 N4 N N5 N Y N 0 1.041 -3.591 0.201
31 N5 N N6 N N N 0 3.48 -0.901 0.054
32 H1 H H1 N N N 0 -5.745 0.409 3.043
33 H2 H H2 N N N 0 -4.144 0.491 2.27
34 H3 H H3 N N N 0 -3.198 -1.142 -0.891
35 H4 H H4 N N N 0 -3.215 -1.022 0.885
36 H5 H H5 N N N 0 -1.164 0.274 -0.967
37 H6 H H6 N N N 0 -1.181 0.394 0.808
38 H7 H H7 N N N 0 -9.6 0.484 0.384
39 H8 H H8 N N N 0 -9.505 0.31 -1.285
40 H9 H H9 N N N 0 -0.948 -2.069 0.977
41 H10 H H10 N N N 0 -0.932 -2.189 -0.799
42 H11 H H11 N N N 0 1.349 -5.641 0.333
43 H12 H H12 N N N 0 3.799 -5.442 0.343
44 H13 H H13 N N N 0 4.841 -3.19 0.209
45 H14 H H14 N N N 0 3.617 -0.981 -2.041
46 H15 H H15 N N N 0 5.118 -1.378 -1.172
47 H16 H H16 N N N 0 5.281 0.857 -2.22
48 H17 H H17 N N N 0 3.827 1.383 -1.337
49 H18 H H18 N N N 0 6.458 0.465 -0.088
50 H19 H H19 N N N 0 5.387 1.066 2.052
51 H20 H H20 N N N 0 3.89 1.507 1.195
52 H21 H H21 N N N 0 5.178 -1.26 1.236
53 H22 H H22 N N N 0 3.721 -0.776 2.136
54 H23 H H23 N N N 0 -3.945 0.441 -2.578
55 H24 H H24 N N N 0 -5.365 0.278 -3.461
56 H25 H H25 N N N 0 -6.059 2.848 2.572
57 H26 H H26 N N N 0 -4.656 2.534 3.622
58 H27 H H27 N N N 0 -4.413 2.905 1.898