Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : WDS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C29 C C1 N Y N 0 3.83 4.94 -1.408
2 C31 C C2 N Y N 0 4.31 5.329 -0.167
3 C4 C C3 N Y N 0 -2.239 -3.049 -0.623
4 C9 C C4 N Y N 0 -3.493 -2.517 -0.52
5 C24 C C5 N Y N 0 2.91 3.904 -1.465
6 C6 C C6 N Y N 0 -2.578 -0.281 -0.369
7 C30 C C7 N Y N 0 3.858 4.676 0.964
8 C1 C C8 N Y N 0 -1.125 -2.211 -0.596
9 C11 C C9 N Y N 0 -3.673 -1.135 -0.393
10 C2 C C10 N Y N 0 -1.289 -0.813 -0.468
11 C20 C C11 N Y N 0 2.509 3.295 -0.292
12 C3 C C12 N N N 0 0.243 -2.742 -0.698
13 C10 C C13 N N N 0 1.015 -0.516 -0.542
14 C14 C C14 N N N 0 -5.041 -0.578 -0.288
15 C26 C C15 N N N 0 -4.921 2.244 2.06
16 C27 C C16 N N N 0 -6.306 2.501 1.411
17 C21 C C17 N N N 0 -4.2 1.438 0.951
18 C22 C C18 N N N 0 -6.558 1.207 0.61
19 C28 C C19 N N N 0 6.615 -3.896 1.84
20 C16 C C20 N N N 0 1.51 2.168 -0.342
21 C23 C C21 N N N 0 5.172 -3.398 1.942
22 C19 C C22 N N N 0 4.63 -3.113 0.54
23 C15 C C23 N N N 0 3.187 -2.615 0.642
24 C12 C C24 N N N 0 2.645 -2.33 -0.761
25 N25 N N1 N Y N 0 2.982 3.694 0.872
26 N5 N N2 N N N 0 -0.193 -0.019 -0.449
27 N7 N N3 N N N 0 1.263 -1.854 -0.663
28 N17 N N4 N N N 0 -5.248 0.583 0.365
29 O8 O O1 N N N 0 0.45 -3.936 -0.81
30 O18 O O2 N N N 0 -5.977 -1.168 -0.791
31 S13 S S1 N N N 0 2.385 0.592 -0.509
32 H1 H H1 N N N 0 4.162 5.435 -2.309
33 H2 H H2 N N N 0 5.027 6.132 -0.085
34 H3 H H3 N N N 0 -2.111 -4.117 -0.721
35 H4 H H4 N N N 0 -4.354 -3.17 -0.537
36 H5 H H5 N N N 0 2.512 3.578 -2.415
37 H6 H H6 N N N 0 -2.72 0.785 -0.271
38 H7 H H7 N N N 0 4.223 4.976 1.935
39 H8 H H8 N N N 0 -4.403 3.182 2.261
40 H9 H H9 N N N 0 -5.02 1.652 2.971
41 H10 H H10 N N N 0 -7.071 2.637 2.175
42 H11 H H11 N N N 0 -6.266 3.366 0.748
43 H12 H H12 N N N 0 -3.795 2.112 0.196
44 H13 H H13 N N N 0 -3.406 0.828 1.38
45 H14 H H14 N N N 0 -7.188 0.53 1.187
46 H15 H H15 N N N 0 -7.038 1.445 -0.339
47 H16 H H16 N N N 0 7.229 -3.133 1.361
48 H17 H H17 N N N 0 7.001 -4.098 2.839
49 H18 H H18 N N N 0 6.643 -4.81 1.247
50 H19 H H19 N N N 0 0.923 2.161 0.577
51 H20 H H20 N N N 0 0.846 2.308 -1.195
52 H21 H H21 N N N 0 4.557 -4.16 2.421
53 H22 H H22 N N N 0 5.144 -2.483 2.535
54 H23 H H23 N N N 0 5.244 -2.351 0.061
55 H24 H H24 N N N 0 4.658 -4.027 -0.053
56 H25 H H25 N N N 0 2.573 -3.378 1.121
57 H26 H H26 N N N 0 3.159 -1.701 1.234
58 H27 H H27 N N N 0 3.26 -1.568 -1.24
59 H28 H H28 N N N 0 2.673 -3.245 -1.353