Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : WID

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.292 0.826 1.489
2 C2 C C2 N Y N 0 -0.923 0.193 1.648
3 C3 C C3 N Y N 0 -1.558 0.863 -0.581
4 C11 C C4 N Y N 0 5.274 1.175 -0.133
5 C12 C C5 N Y N 0 4.143 1.96 -0.006
6 C13 C C6 N Y N 0 6.291 -1.098 -0.369
7 C14 C C7 N Y N 0 -1.856 0.209 0.613
8 C15 C C8 N Y N 0 -3.164 -0.471 0.782
9 C17 C C9 N Y N 0 -3.595 -1.167 1.928
10 C18 C C10 N Y N 0 -4.838 -1.637 1.685
11 C21 C C11 N N N 0 -6.459 -1.562 -0.227
12 C22 C C12 S N N 0 -7.11 -0.26 -0.699
13 C24 C C13 N N N 0 -8.373 -0.583 -1.501
14 C28 C C14 N Y N 0 7.592 -2.898 -0.585
15 C29 C C15 N Y N 0 6.272 -2.46 -0.474
16 C4 C C16 N Y N 0 -0.346 1.503 -0.73
17 C5 C C17 N Y N 0 0.584 1.482 0.3
18 O6 O O1 N N N 0 1.778 2.114 0.15
19 C7 C C18 N Y N 0 2.892 1.35 0.026
20 N8 N N1 N Y N 0 2.775 0.035 -0.065
21 C9 C C19 N Y N 0 3.827 -0.749 -0.187
22 C10 C C20 N Y N 0 5.113 -0.213 -0.231
23 F16 F F1 N N N 0 4.251 3.304 0.088
24 N19 N N2 N Y N 0 -5.189 -1.26 0.437
25 N20 N N3 N Y N 0 -4.129 -0.526 -0.112
26 N23 N N4 N N N 0 -7.466 0.56 0.466
27 O25 O O2 N N N 0 -8.916 0.624 -2.039
28 N26 N N5 N Y N 0 7.595 -0.706 -0.409
29 N27 N N6 N Y N 0 8.383 -1.857 -0.54
30 H1 H H1 N N N 0 1.016 0.814 2.29
31 H2 H H2 N N N 0 -1.151 -0.313 2.574
32 H3 H H3 N N N 0 -2.279 0.876 -1.384
33 H4 H H4 N N N 0 6.258 1.621 -0.161
34 H5 H H5 N N N 0 -3.032 -1.301 2.84
35 H6 H H6 N N N 0 -5.443 -2.214 2.368
36 H7 H H7 N N N 0 -7.124 -2.067 0.473
37 H8 H H8 N N N 0 -6.276 -2.209 -1.085
38 H9 H H9 N N N 0 -6.41 0.288 -1.33
39 H10 H H10 N N N 0 -8.123 -1.264 -2.314
40 H11 H H11 N N N 0 -9.108 -1.052 -0.847
41 H12 H H12 N N N 0 7.908 -3.926 -0.683
42 H13 H H13 N N N 0 5.392 -3.086 -0.471
43 H14 H H14 N N N 0 -0.114 2.01 -1.656
44 H15 H H15 N N N 0 3.691 -1.818 -0.258
45 H16 H H16 N N N 0 -7.838 1.453 0.18
46 H17 H H17 N N N 0 -8.114 0.073 1.066
47 H19 H H19 N N N 0 -9.72 0.495 -2.561
48 H20 H H20 N N N 0 7.92 0.207 -0.355