Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : WOD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 2.588 -0.766 -0.956
2 N12 N N1 N N N 0 3.877 0.527 0.598
3 C13 C C2 N N N 0 2.49 1.064 0.67
4 C01 C C3 N N N 0 -4.108 0.77 0.55
5 C02 C C4 N N N 0 -4.225 -0.685 0.09
6 C03 C C5 N N N 0 -3.211 0.249 -0.574
7 C04 C C6 N Y N 0 -1.753 0.032 -0.257
8 C07 C C7 N Y N 0 0.36 0.148 -0.274
9 C09 C C8 R N N 0 1.791 0.502 -0.586
10 C11 C C9 N N N 0 3.704 -0.864 0.107
11 N05 N N2 N Y N 0 -1.274 -0.771 0.645
12 N08 N N3 N Y N 0 -0.71 0.628 -0.861
13 O06 O O1 N Y N 0 -0.062 -0.717 0.653
14 H1 H H1 N N N 0 1.945 -1.644 -0.911
15 H2 H H2 N N N 0 3.021 -0.664 -1.951
16 H3 H H3 N N N 0 4.44 1.069 -0.04
17 H5 H H5 N N N 0 1.992 0.71 1.572
18 H6 H H6 N N N 0 2.503 2.154 0.644
19 H7 H H7 N N N 0 -4.914 1.45 0.276
20 H8 H H8 N N N 0 -3.644 0.955 1.519
21 H9 H H9 N N N 0 -3.838 -1.456 0.756
22 H10 H H10 N N N 0 -5.107 -0.961 -0.487
23 H11 H H11 N N N 0 -3.426 0.587 -1.588
24 H12 H H12 N N N 0 1.833 1.227 -1.399
25 H13 H H13 N N N 0 3.395 -1.52 0.921
26 H14 H H14 N N N 0 4.629 -1.225 -0.344