Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : X7I

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -5.068 -0.384 -0.255
2 C6 C C2 N Y N 0 -6.481 -2.37 -0.014
3 C13 C C3 N N N 0 5.533 0.209 -1.431
4 C16 C C4 N Y N 0 8.791 -0.95 0.045
5 C2 C C5 N Y N 0 -7.329 -0.28 -0.737
6 C5 C C6 N Y N 0 -5.166 -1.737 0.081
7 C11 C C7 N N N 0 2.388 1.548 0.033
8 C12 C C8 N N N 0 4.685 0.807 -0.307
9 C14 C C9 N Y N 0 6.938 -0.016 -0.934
10 C15 C C10 N Y N 0 7.981 0.817 -1.082
11 C17 C C11 N Y N 0 9.535 -1.904 0.732
12 N12 N N1 N N N 0 3.319 1.026 -0.79
13 O5' O O1 N N N 0 1.133 1.749 -0.411
14 C5' C C12 N N N 0 0.184 2.315 0.531
15 C4' C C13 R N N 0 -1.178 2.469 -0.149
16 O4' O O2 N N N 0 -1.725 1.174 -0.447
17 C3' C C14 S N N 0 -2.162 3.177 0.803
18 O3' O O3 N N N 0 -2.63 4.396 0.223
19 C2' C C15 R N N 0 -3.327 2.17 0.962
20 O2' O O4 N N N 0 -4.588 2.843 0.945
21 C1' C C16 R N N 0 -3.157 1.276 -0.298
22 N9 N N2 N Y N 0 -3.75 -0.045 -0.076
23 C8 C C17 N Y N 0 -3.095 -1.161 0.344
24 N7 N N3 N Y N 0 -3.933 -2.156 0.437
25 N6 N N4 N Y N 0 -6.933 -3.584 0.222
26 N1 N N5 N Y N 0 -7.535 -1.59 -0.428
27 N3 N N6 N Y N 0 -6.161 0.284 -0.648
28 C9 C C18 N Y N 0 -8.248 -3.62 -0.026
29 C10 C C19 N Y N 0 -8.643 -2.397 -0.435
30 O11 O O5 N N N 0 2.682 1.838 1.176
31 N15 N N7 N Y N 0 9.095 0.277 -0.501
32 C21 C C20 N Y N 0 7.427 -1.188 -0.205
33 C20 C C21 N Y N 0 6.835 -2.373 0.236
34 C19 C C22 N Y N 0 7.584 -3.296 0.91
35 C18 C C23 N Y N 0 8.931 -3.066 1.158
36 H1 H H1 N N N 0 5.103 -0.741 -1.745
37 H2 H H2 N N N 0 5.553 0.897 -2.276
38 H3 H H3 N N N 0 -8.17 0.316 -1.061
39 H4 H H4 N N N 0 4.665 0.119 0.539
40 H5 H H5 N N N 0 5.115 1.758 0.008
41 H6 H H6 N N N 0 7.944 1.773 -1.583
42 H7 H H7 N N N 0 10.583 -1.733 0.93
43 H8 H H8 N N N 0 3.084 0.794 -1.702
44 H9 H H9 N N N 0 0.087 1.654 1.392
45 H10 H H10 N N N 0 0.538 3.292 0.861
46 H14 H H14 N N N 0 -3.213 1.584 1.873
47 H11 H H11 N N N 0 -1.071 3.047 -1.067
48 H12 H H12 N N N 0 -1.689 3.371 1.766
49 H13 H H13 N N N 0 -3.252 4.883 0.78
50 H15 H H15 N N N 0 -4.703 3.48 1.663
51 H16 H H16 N N N 0 -3.6 1.755 -1.171
52 H17 H H17 N N N 0 -2.04 -1.215 0.571
53 H18 H H18 N N N 0 -8.885 -4.485 0.08
54 H19 H H19 N N N 0 -9.646 -2.106 -0.711
55 H20 H H20 N N N 0 9.97 0.696 -0.477
56 H21 H H21 N N N 0 5.788 -2.559 0.047
57 H22 H H22 N N N 0 7.126 -4.213 1.251
58 H23 H H23 N N N 0 9.51 -3.805 1.691