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PDBeChem : Atoms of Molecule
Molecule : X9D
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 52
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C05 |
C |
C1 |
N |
N |
N |
0 |
3.635 |
0.287 |
-0.13 |
2 |
C06 |
C |
C2 |
N |
Y |
N |
0 |
2.961 |
-1.061 |
-0.11 |
3 |
C07 |
C |
C3 |
N |
Y |
N |
0 |
1.55 |
-1.154 |
-0.121 |
4 |
C08 |
C |
C4 |
N |
N |
N |
0 |
0.752 |
0.01 |
-0.146 |
5 |
C10 |
C |
C5 |
S |
N |
N |
-1 |
-1.318 |
0.991 |
-0.184 |
6 |
C11 |
C |
C6 |
N |
N |
N |
0 |
-2.711 |
0.987 |
-0.76 |
7 |
C12 |
C |
C7 |
R |
N |
N |
0 |
-3.717 |
0.654 |
0.343 |
8 |
C14 |
C |
C8 |
N |
Y |
N |
0 |
-5.13 |
0.723 |
-0.19 |
9 |
C15 |
C |
C9 |
N |
Y |
N |
0 |
-5.666 |
-0.55 |
-0.045 |
10 |
C17 |
C |
C10 |
N |
N |
N |
0 |
-3.559 |
-0.785 |
0.788 |
11 |
C19 |
C |
C11 |
N |
Y |
N |
0 |
-6.976 |
-0.781 |
-0.46 |
12 |
C20 |
C |
C12 |
N |
Y |
N |
0 |
-7.721 |
0.244 |
-1.005 |
13 |
C21 |
C |
C13 |
N |
Y |
N |
0 |
-7.176 |
1.507 |
-1.145 |
14 |
C22 |
C |
C14 |
N |
Y |
N |
0 |
-5.875 |
1.744 |
-0.736 |
15 |
C23 |
C |
C15 |
N |
N |
N |
0 |
-0.831 |
2.13 |
0.457 |
16 |
C26 |
C |
C16 |
N |
Y |
N |
0 |
0.954 |
-2.44 |
-0.108 |
17 |
C28 |
C |
C17 |
N |
Y |
N |
0 |
1.752 |
-3.539 |
-0.085 |
18 |
C29 |
C |
C18 |
N |
N |
N |
0 |
1.131 |
-4.912 |
-0.071 |
19 |
C31 |
C |
C19 |
N |
Y |
N |
0 |
3.7 |
-2.194 |
-0.087 |
20 |
N09 |
N |
N1 |
N |
N |
N |
1 |
-0.554 |
-0.09 |
-0.288 |
21 |
N16 |
N |
N2 |
N |
N |
N |
0 |
-4.725 |
-1.407 |
0.528 |
22 |
N30 |
N |
N3 |
N |
Y |
N |
1 |
3.104 |
-3.411 |
-0.075 |
23 |
O01 |
O |
O1 |
N |
N |
N |
0 |
5.951 |
2.142 |
-1.527 |
24 |
O03 |
O |
O2 |
N |
N |
N |
0 |
5.789 |
2.255 |
0.99 |
25 |
O04 |
O |
O3 |
N |
N |
N |
0 |
5.052 |
0.111 |
-0.12 |
26 |
O13 |
O |
O4 |
N |
N |
N |
0 |
-3.556 |
1.541 |
1.451 |
27 |
O18 |
O |
O5 |
N |
N |
N |
0 |
-2.571 |
-1.285 |
1.282 |
28 |
O24 |
O |
O6 |
N |
N |
N |
0 |
-0.118 |
2.019 |
1.44 |
29 |
O25 |
O |
O7 |
N |
N |
N |
0 |
-1.15 |
3.359 |
-0.011 |
30 |
O27 |
O |
O8 |
N |
N |
N |
-1 |
-0.399 |
-2.572 |
-0.117 |
31 |
O32 |
O |
O9 |
N |
N |
N |
0 |
7.591 |
0.782 |
0.013 |
32 |
P02 |
P |
P1 |
N |
N |
N |
0 |
6.089 |
1.342 |
-0.137 |
33 |
H051 |
H |
H1 |
N |
N |
N |
0 |
3.342 |
0.826 |
-1.031 |
34 |
H052 |
H |
H2 |
N |
N |
N |
0 |
3.333 |
0.857 |
0.749 |
35 |
H081 |
H |
H4 |
N |
N |
N |
0 |
1.211 |
0.982 |
-0.047 |
36 |
H111 |
H |
H6 |
N |
N |
N |
0 |
-2.936 |
1.971 |
-1.172 |
37 |
H112 |
H |
H7 |
N |
N |
N |
0 |
-2.776 |
0.239 |
-1.55 |
38 |
H191 |
H |
H8 |
N |
N |
N |
0 |
-7.409 |
-1.765 |
-0.354 |
39 |
H201 |
H |
H9 |
N |
N |
N |
0 |
-8.736 |
0.058 |
-1.326 |
40 |
H211 |
H |
H10 |
N |
N |
N |
0 |
-7.763 |
2.306 |
-1.573 |
41 |
H221 |
H |
H11 |
N |
N |
N |
0 |
-5.446 |
2.73 |
-0.843 |
42 |
H292 |
H |
H12 |
N |
N |
N |
0 |
0.991 |
-5.258 |
-1.095 |
43 |
H293 |
H |
H13 |
N |
N |
N |
0 |
1.788 |
-5.602 |
0.459 |
44 |
H291 |
H |
H14 |
N |
N |
N |
0 |
0.166 |
-4.869 |
0.434 |
45 |
H311 |
H |
H15 |
N |
N |
N |
0 |
4.778 |
-2.128 |
-0.083 |
46 |
H091 |
H |
H17 |
N |
N |
N |
0 |
-0.957 |
-0.954 |
-0.469 |
47 |
H161 |
H |
H18 |
N |
N |
N |
0 |
-4.893 |
-2.343 |
0.718 |
48 |
H4 |
H |
H19 |
N |
N |
N |
0 |
6.134 |
1.605 |
-2.31 |
49 |
H131 |
H |
H20 |
N |
N |
N |
0 |
-4.169 |
1.375 |
2.18 |
50 |
H5 |
H |
H21 |
N |
N |
N |
0 |
-0.767 |
4.085 |
0.498 |
51 |
H7 |
H |
H23 |
N |
N |
N |
0 |
8.27 |
1.47 |
0.011 |
52 |
H301 |
H |
H24 |
N |
N |
N |
0 |
3.655 |
-4.209 |
-0.058 |
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