Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : XDL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 17


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.309 -0.156 -0.696
2 C2 C C2 N N N 0 -0.769 0.105 0.493
3 C3 C C3 S N N 0 0.696 0.352 0.703
4 O3 O O3 N N N 0 1.128 -0.328 1.883
5 C4 C C4 N N N 0 1.488 -0.164 -0.5
6 C5 C C5 N N N 0 0.829 0.368 -1.778
7 C6 C C6 N N N 0 -0.544 -0.285 -1.929
8 O2 O O2 N N N 0 -1.501 0.149 1.459
9 H1 H H1 N N N 0 -2.271 -0.269 -0.743
10 H3 H H3 N N N 0 0.87 1.422 0.819
11 HA H HA N N N 0 0.609 0.026 2.617
12 H4C1 H 1H4C N N N 0 2.517 0.19 -0.442
13 H4C2 H 2H4C N N N 0 1.475 -1.254 -0.507
14 H5C1 H 1H5C N N N 0 0.714 1.449 -1.706
15 H5C2 H 2H5C N N N 0 1.449 0.12 -2.639
16 H6C1 H 1H6C N N N 0 -1.086 0.199 -2.742
17 H6C2 H 2H6C N N N 0 -0.417 -1.341 -2.166