Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : XLX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O13 O O13 N N N 0 2.578 -1.25 0.01
2 C12 C C12 N N N 0 2.493 -0.04 0.01
3 C11 C C11 N N N 0 3.743 0.803 0.005
4 N8 N N8 N N N 0 1.282 0.551 0.008
5 C7 C C7 N N N 0 0.067 -0.268 0.006
6 C6 C C6 N N N 0 -1.162 0.642 0.004
7 N1 N N1 N N N 0 -2.377 -0.177 0.003
8 C2 C C2 N N N 0 -3.588 0.414 0.001
9 O15 O O15 N N N 0 -3.673 1.624 0.0
10 C3 C C3 N N N 0 -4.837 -0.429 -0.001
11 H1 H H1 N N N 0 3.753 1.431 -0.886
12 H2 H H2 N N N 0 3.759 1.432 0.894
13 H4 H H4 N N N 0 1.214 1.518 0.007
14 H5 H H5 N N N 0 0.055 -0.898 -0.883
15 H6 H H6 N N N 0 0.052 -0.897 0.897
16 H7 H H7 N N N 0 -1.15 1.272 0.894
17 H8 H H8 N N N 0 -1.147 1.271 -0.886
18 H9 H H9 N N N 0 -2.309 -1.145 0.003
19 H10 H H10 N N N 0 -4.85 -1.058 -0.891
20 H11 H H11 N N N 0 -4.853 -1.057 0.89
21 C1 C C1 N N N 0 -6.067 0.482 -0.003
22 C4 C C4 N N N 0 -7.316 -0.361 -0.004
23 O2 O O2 N N N 0 -7.232 -1.566 -0.004
24 O1 O O1 N N N 0 -8.523 0.228 -0.007
25 C9 C C9 N N N 0 4.972 -0.108 0.002
26 C10 C C10 N N N 0 6.24 0.747 -0.003
27 C13 C C13 N N N 0 7.451 -0.15 -0.007
28 O4 O O4 N N N 0 8.683 0.385 -0.011
29 O3 O O3 N N N 0 7.314 -1.35 -0.005
30 H3 H H3 N N N 0 -6.054 1.112 0.887
31 H12 H H12 N N N 0 -6.052 1.111 -0.893
32 H13 H H13 N N N 0 -9.295 -0.354 -0.007
33 H14 H H14 N N N 0 4.961 -0.737 0.892
34 H15 H H15 N N N 0 4.955 -0.738 -0.888
35 H16 H H16 N N N 0 6.251 1.376 -0.894
36 H17 H H17 N N N 0 6.257 1.377 0.886
37 H18 H H18 N N N 0 9.428 -0.231 -0.013