Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : XM5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O15 O O15 N N N 0 -2.095 -2.803 -0.002
2 C9 C C9 N N N 0 -1.63 -1.675 0.003
3 N10 N N10 N N N 0 -0.295 -1.518 0.027
4 C14 C C14 N N N 0 0.569 -2.701 0.047
5 O13 O O13 N N N 0 3.566 1.067 0.091
6 C3 C C3 N Y N 0 0.276 -0.26 0.034
7 C4 C C4 N Y N 0 1.659 -0.101 0.059
8 C5 C C5 N Y N 0 2.205 1.176 0.065
9 C12 C C12 N N N 0 3.853 -0.284 -0.313
10 O11 O O11 N N N 0 2.675 -1.014 0.08
11 C6 C C6 N Y N 0 1.376 2.295 0.047
12 C1 C C1 N Y N 0 0.019 2.155 0.022
13 C2 C C2 N Y N 0 -0.55 0.878 0.015
14 C7 C C7 N N N 0 -2.007 0.696 -0.012
15 C8 C C8 N N N 0 -2.503 -0.577 -0.023
16 O16 O O16 N N N 0 -2.838 1.764 -0.032
17 C17 C C17 N N N 0 -4.241 1.493 -0.057
18 H14 H H14 N N N 0 -0.047 -3.601 0.038
19 H14A H H14A N N N 0 1.215 -2.694 -0.831
20 H14B H H14B N N N 0 1.181 -2.689 0.948
21 H12 H H12 N N N 0 3.996 -0.339 -1.392
22 H12A H H12A N N N 0 4.732 -0.662 0.209
23 H6 H H6 N N N 0 1.812 3.283 0.052
24 H1 H H1 N N N 0 -0.615 3.03 0.008
25 H17B H H17B N N N 0 -4.792 2.433 -0.071
26 H8 H H8 N N N 0 -3.57 -0.739 -0.047
27 H17 H H17 N N N 0 -4.484 0.916 -0.95
28 H17A H H17A N N N 0 -4.517 0.923 0.83