Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : XVA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N Y N 0 -4.429 -1.321 0.657
2 C03 C C2 N Y N 0 -5.109 -0.127 0.436
3 C04 C C3 N Y N 0 -4.423 0.948 -0.099
4 C05 C C4 N Y N 0 -3.076 0.793 -0.397
5 C06 C C5 N Y N 0 -2.465 -0.42 -0.152
6 C07 C C6 N N N 0 -5.123 2.259 -0.354
7 C11 C C7 N Y N 0 1.202 -1.247 0.454
8 C12 C C8 N Y N 0 1.635 -2.385 -0.204
9 C13 C C9 N Y N 0 2.98 -2.542 -0.503
10 C14 C C10 N Y N 0 3.886 -1.559 -0.144
11 C15 C C11 N Y N 0 3.451 -0.424 0.512
12 C16 C C12 N Y N 0 2.11 -0.268 0.812
13 C21 C C13 N N N 0 -1.003 -0.595 -0.473
14 C22 C C14 N N N 0 -0.26 -1.073 0.776
15 C23 C C15 N N N 0 4.439 0.645 0.904
16 C24 C C16 N N N 0 4.567 1.661 -0.233
17 C26 C C17 N N N 0 5.858 3.561 -0.998
18 C27 C C18 N N N 0 5.025 3.5 1.275
19 F08 F F1 N N N 0 -4.504 3.27 0.388
20 F09 F F2 N N N 0 -5.05 2.569 -1.717
21 F12 F F3 N N N 0 0.749 -3.343 -0.553
22 F13 F F4 N N N 0 3.405 -3.652 -1.145
23 N01 N N1 N Y N 0 -3.143 -1.427 0.365
24 N02 N N2 N N N 0 -5.106 -2.409 1.195
25 N25 N N3 N N N 0 5.529 2.703 0.148
26 H1 H H1 N N N 0 -6.158 -0.041 0.679
27 H2 H H2 N N N 0 -2.512 1.613 -0.817
28 H3 H H3 N N N 0 -6.168 2.176 -0.056
29 H4 H H4 N N N 0 4.934 -1.68 -0.377
30 H5 H H5 N N N 0 1.772 0.62 1.324
31 H6 H H6 N N N 0 -0.891 -1.332 -1.268
32 H7 H H7 N N N 0 -0.586 0.358 -0.801
33 H8 H H8 N N N 0 -0.676 -2.025 1.103
34 H9 H H9 N N N 0 -0.371 -0.335 1.57
35 H10 H H10 N N N 0 4.09 1.149 1.805
36 H11 H H11 N N N 0 5.41 0.189 1.095
37 H12 H H12 N N N 0 4.915 1.157 -1.134
38 H13 H H13 N N N 0 3.595 2.117 -0.424
39 H14 H H14 N N N 0 4.95 4.041 -1.364
40 H15 H H15 N N N 0 6.572 4.324 -0.688
41 H16 H H16 N N N 0 6.295 2.955 -1.792
42 H17 H H17 N N N 0 4.856 2.849 2.133
43 H18 H H18 N N N 0 5.757 4.264 1.536
44 H19 H H19 N N N 0 4.087 3.977 0.991
45 H20 H H20 N N N 0 -4.636 -3.242 1.355
46 H21 H H21 N N N 0 -6.049 -2.336 1.411