Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y0J

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -4.017 -1.336 -0.071
2 N3 N N2 N N N 0 2.969 -0.698 -0.304
3 C4 C C1 N Y N 0 -7.478 -0.062 -0.585
4 C5 C C2 N Y N 0 -7.166 1.278 -0.414
5 C6 C C3 N Y N 0 -5.867 1.665 -0.148
6 C7 C C4 N Y N 0 -4.869 0.71 -0.049
7 C8 C C5 N N N 0 1.502 0.862 0.865
8 C10 C C6 N N N 0 4.276 -1.014 -0.214
9 C13 C C7 N Y N 0 7.216 1.15 -0.143
10 C15 C C8 N N N 0 1.953 -1.75 -0.444
11 N N N3 N N N 0 -1.732 -0.827 0.384
12 C C C9 N N N 0 -0.819 0.134 0.63
13 O O O1 N N N 0 -1.175 1.288 0.771
14 C1 C C10 N Y N 0 -3.055 -0.486 0.175
15 C11 C C11 N Y N 0 5.29 0.045 -0.241
16 C12 C C12 N Y N 0 6.628 -0.119 -0.018
17 C14 C C13 N Y N 0 6.224 2.021 -0.432
18 C16 C C14 N N N 0 0.922 -1.588 0.679
19 C2 C C15 N Y N 0 -5.181 -0.647 -0.221
20 C3 C C16 N Y N 0 -6.497 -1.024 -0.49
21 C9 C C17 N N N 0 2.534 0.705 -0.258
22 N2 N N4 N N N 0 0.487 -0.185 0.72
23 O1 O O2 N Y N 0 -3.539 0.768 0.195
24 O2 O O3 N N N 0 4.615 -2.178 -0.109
25 O3 O O4 N Y N 0 5.067 1.351 -0.496
26 H2 H H1 N N N 0 -8.498 -0.352 -0.793
27 H3 H H2 N N N 0 -7.943 2.024 -0.49
28 H4 H H3 N N N 0 -5.631 2.711 -0.017
29 H5 H H4 N N N 0 1.995 0.762 1.832
30 H6 H H5 N N N 0 1.03 1.842 0.794
31 H10 H H6 N N N 0 8.263 1.386 -0.025
32 H12 H H7 N N N 0 1.459 -1.655 -1.411
33 H13 H H8 N N N 0 2.427 -2.729 -0.371
34 H H H9 N N N 0 -1.46 -1.758 0.353
35 H9 H H10 N N N 0 7.135 -1.045 0.209
36 H11 H H11 N N N 0 6.346 3.083 -0.587
37 H14 H H12 N N N 0 0.064 -2.231 0.484
38 H15 H H13 N N N 0 1.374 -1.862 1.633
39 H1 H H14 N N N 0 -6.746 -2.067 -0.624
40 H7 H H15 N N N 0 3.392 1.347 -0.058
41 H8 H H16 N N N 0 2.083 0.981 -1.211