Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y0M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -4.473 -1.917 0.925
2 C4 C C1 N Y N 0 -2.851 -0.396 0.135
3 C5 C C2 N Y N 0 -4.126 -0.677 0.626
4 C6 C C3 N N N 0 -6.308 -0.022 1.303
5 C7 C C4 N Y N 0 -3.636 -2.927 0.774
6 C8 C C5 N Y N 0 -2.358 -2.725 0.294
7 C10 C C6 N Y N 0 0.809 1.085 0.027
8 C13 C C7 N N N 0 0.838 2.362 2.033
9 N N N2 N N N 0 -2.485 0.917 -0.181
10 C C C8 N Y N 0 2.591 -0.471 -0.392
11 O O O1 N N N 0 3.944 -2.178 0.947
12 C1 C C9 N Y N 0 1.882 -0.994 -1.457
13 C11 C C10 N Y N 0 2.057 0.569 0.354
14 C12 C C11 N N N 0 2.366 2.356 1.892
15 C2 C C12 N Y N 0 0.641 -0.48 -1.783
16 C3 C C13 N Y N 0 0.104 0.557 -1.044
17 C9 C C14 N Y N 0 -1.949 -1.44 -0.034
18 O1 O O2 N N N 0 -1.964 0.423 -2.543
19 O2 O O3 N N N 0 -5.019 0.331 0.797
20 O3 O O4 N N N 0 -1.324 2.621 -1.538
21 O4 O O5 N N N 0 2.766 1.071 1.402
22 O5 O O6 N N N 0 0.269 2.108 0.744
23 O6 O O7 N N N 0 4.862 -1.313 -1.211
24 S S S1 N N N 0 4.174 -1.128 0.018
25 S1 S S2 N N N 0 -1.478 1.21 -1.464
26 H63 H H1 N N N 0 -6.922 0.874 1.391
27 H62 H H2 N N N 0 -6.786 -0.724 0.619
28 H61 H H3 N N N 0 -6.199 -0.486 2.283
29 H71 H H4 N N N 0 -3.957 -3.926 1.029
30 H81 H H5 N N N 0 -1.682 -3.559 0.175
31 H132 H H6 N N N 0 0.53 1.584 2.731
32 H131 H H7 N N N 0 0.506 3.335 2.397
33 HN1 H H8 N N N 0 -2.82 1.656 0.35
34 H11 H H10 N N N 0 2.299 -1.804 -2.037
35 H121 H H11 N N N 0 2.674 3.13 1.189
36 H122 H H12 N N N 0 2.826 2.538 2.864
37 H21 H H13 N N N 0 0.088 -0.891 -2.615
38 H91 H H14 N N N 0 -0.955 -1.256 -0.412
39 F1 F F1 N N Y 0 4.972 0.019 0.818