Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y57

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 0.702 2.604 0.047
2 N N N1 N N N 0 -4.615 -2.311 0.093
3 CA C C2 S N N 0 -4.903 -0.91 0.424
4 C C C3 N N N 0 -6.272 -0.543 -0.089
5 O O O1 N N N 0 -6.788 -1.204 -0.959
6 CB C C4 N N N 0 -3.855 -0.005 -0.228
7 CG C C5 N N N 0 -2.482 -0.292 0.384
8 CD C C6 N N N 0 -1.434 0.612 -0.269
9 CE C C7 N N N 0 -0.062 0.325 0.343
10 C01 C C8 N Y N 0 4.095 -0.879 -0.299
11 C02 C C9 N Y N 0 4.406 -1.646 0.808
12 C03 C C10 N Y N 0 5.724 -1.967 1.078
13 C04 C C11 N Y N 0 6.729 -1.521 0.241
14 C05 C C12 N Y N 0 6.417 -0.754 -0.867
15 C06 C C13 N Y N 0 5.099 -0.438 -1.139
16 C07 C C14 N N N 0 2.659 -0.528 -0.592
17 C08 C C15 N N N 0 2.303 0.788 0.102
18 C11 C C16 N N N 0 1.027 2.845 1.523
19 C12 C C17 N N N 0 1.594 3.492 -0.822
20 NZ N N2 N N N 0 0.945 1.193 -0.283
21 H1 H H1 N N N 0 -0.344 2.846 -0.139
22 H2 H H2 N N Y 0 -5.254 -2.933 0.564
23 H H H3 N N N 0 -4.636 -2.459 -0.905
24 HA H H5 N N N 0 -4.873 -0.779 1.506
25 HB2 H H7 N N N 0 -3.823 -0.201 -1.3
26 HB3 H H8 N N N 0 -4.118 1.038 -0.057
27 HG2 H H9 N N N 0 -2.514 -0.097 1.455
28 HG3 H H10 N N N 0 -2.219 -1.336 0.212
29 HD2 H H11 N N N 0 -1.403 0.417 -1.341
30 HD3 H H12 N N N 0 -1.698 1.656 -0.097
31 HE2 H H13 N N N 0 -0.093 0.521 1.415
32 HE3 H H14 N N N 0 0.202 -0.719 0.171
33 H15 H H15 N N N 0 3.621 -1.994 1.463
34 H16 H H16 N N N 0 5.967 -2.566 1.943
35 H17 H H17 N N N 0 7.759 -1.768 0.454
36 H18 H H18 N N N 0 7.203 -0.406 -1.521
37 H19 H H19 N N N 0 4.856 0.161 -2.004
38 H20 H H20 N N N 0 2.524 -0.42 -1.668
39 H21 H H21 N N N 0 2.008 -1.321 -0.223
40 H22 H H22 N N N 0 2.349 0.653 1.183
41 H23 H H23 N N N 0 3.011 1.56 -0.198
42 H24 H H24 N N N 0 0.847 3.891 1.769
43 H25 H H25 N N N 0 0.391 2.212 2.143
44 H26 H H26 N N N 0 2.073 2.602 1.709
45 H27 H H27 N N N 0 2.64 3.299 -0.586
46 H28 H H28 N N N 0 1.413 3.27 -1.874
47 H29 H H29 N N N 0 1.364 4.54 -0.627
48 OXT O OXT N N Y 0 -6.918 0.517 0.421
49 HXT H HXT N N Y 0 -7.793 0.713 0.06