Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y8S

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N11 N N1 N N N 0 2.54 -0.337 -0.141
2 C12 C C1 N N N 0 1.269 0.105 -0.057
3 C14 C C2 N N N 0 0.341 -1.01 -2.068
4 N18 N N2 N N N 0 -1.132 -0.05 -0.368
5 C19 C C3 N N N 0 -2.278 -0.753 -0.267
6 C21 C C4 N N N 0 -4.64 -0.933 0.021
7 C22 C C5 S N N 0 -5.861 -0.035 0.234
8 C23 C C6 N N N 0 -7.129 -0.886 0.214
9 C24 C C7 R N N 0 -8.36 -0.039 0.498
10 C25 C C8 N N N 0 -8.216 0.711 1.823
11 C26 C C9 S N N 0 -6.966 1.595 1.746
12 C27 C C10 N N N 0 -5.743 0.676 1.586
13 C02 C C11 N N N 0 3.512 -2.155 1.599
14 C04 C C12 N N N 0 5.517 -3.327 1.541
15 C05 C C13 N N N 0 5.835 -1.982 2.231
16 C06 C C14 S N N 0 4.598 -1.134 1.855
17 C07 C C15 N N N 0 4.873 -0.316 0.591
18 C08 C C16 S N N 0 3.647 0.536 0.258
19 C09 C C17 R N N 0 3.985 1.489 -0.89
20 C13 C C18 S N N 0 0.139 -0.748 -0.574
21 C15 C C19 N N N 0 -0.736 -1.976 -2.566
22 C16 C C20 N N N 0 -0.611 -2.142 -4.082
23 C17 C C21 N N N 0 -0.554 -3.336 -1.887
24 C28 C C22 N N N 0 -7.056 2.472 0.525
25 C29 C C23 N N N 0 -7.785 2.184 -0.504
26 C30 C C24 N N N 0 -8.639 0.949 -0.626
27 N03 N N3 N N N 0 4.054 -3.374 1.433
28 O01 O O1 N N N 0 2.325 -1.911 1.556
29 O10 O O2 N N N 0 4.506 0.743 -1.991
30 O20 O O3 N N N 0 -3.447 -0.112 -0.078
31 O31 O O4 N N N 0 -2.256 -1.965 -0.347
32 O32 O O5 N N N 0 1.035 1.188 0.435
33 H1 H H1 N N N 0 2.721 -1.234 -0.463
34 H2 H H2 N N N 0 0.267 -0.071 -2.615
35 H3 H H3 N N N 0 1.326 -1.449 -2.23
36 H4 H H4 N N N 0 -1.15 0.918 -0.304
37 H5 H H5 N N N 0 -4.542 -1.617 0.864
38 H6 H H6 N N N 0 -4.765 -1.505 -0.898
39 H7 H H7 N N N 0 -5.909 0.707 -0.563
40 H8 H H8 N N N 0 -7.233 -1.35 -0.767
41 H9 H H9 N N N 0 -7.049 -1.666 0.971
42 H10 H H10 N N N 0 -9.22 -0.704 0.575
43 H11 H H11 N N N 0 -9.096 1.332 1.99
44 H12 H H12 N N N 0 -8.11 -0.004 2.639
45 H13 H H13 N N N 0 -6.872 2.203 2.646
46 H14 H H14 N N N 0 -5.729 -0.061 2.389
47 H15 H H15 N N N 0 -4.829 1.269 1.613
48 H16 H H16 N N N 0 5.97 -3.359 0.55
49 H17 H H17 N N N 0 5.91 -2.105 3.312
50 H18 H H18 N N N 0 6.747 -1.543 1.827
51 H19 H H19 N N N 0 4.318 -0.478 2.679
52 H20 H H20 N N N 0 5.732 0.333 0.759
53 H21 H H21 N N N 0 5.083 -0.991 -0.239
54 H22 H H22 N N N 0 3.356 1.113 1.136
55 S1 S S1 N N Y 0 5.224 2.691 -0.332
56 H24 H H24 N N N 0 3.083 2.016 -1.202
57 H25 H H25 N N N 0 0.124 -1.696 -0.037
58 H26 H H26 N N N 0 -1.721 -1.578 -2.323
59 H27 H H27 N N N 0 0.374 -2.54 -4.324
60 H28 H H28 N N N 0 -1.378 -2.83 -4.436
61 H29 H H29 N N N 0 -0.741 -1.173 -4.565
62 H30 H H30 N N N 0 -0.643 -3.218 -0.808
63 H31 H H31 N N N 0 -1.321 -4.024 -2.242
64 H32 H H32 N N N 0 0.431 -3.734 -2.13
65 H33 H H33 N N N 0 -6.483 3.388 0.507
66 H34 H H34 N N N 0 -7.766 2.869 -1.339
67 H35 H H35 N N N 0 -8.45 0.464 -1.583
68 H36 H H36 N N N 0 -9.686 1.252 -0.582
69 H37 H H37 N N N 0 3.895 0.08 -2.341
70 O1 O O6 N N Y 0 6.394 2.025 0.124
71 O2 O O7 N N Y 0 5.308 3.779 -1.243
72 O3 O O8 N N Y 0 4.624 3.3 0.926
73 H23 H H23 N N N 0 5.878 -4.157 2.148
74 H38 H H38 N N N 0 3.544 -4.181 1.263
75 H39 H H39 N N Y 0 5.182 3.971 1.343