Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YAV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 98


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -11.859 -0.804 1.557
2 C15 C C2 N Y N 0 -13.167 -3.774 0.731
3 C17 C C3 N N N 0 -14.759 -5.685 0.692
4 C20 C C4 N Y N 0 -11.13 -3.798 -0.592
5 C22 C C5 N Y N 0 -7.757 2.325 0.676
6 C24 C C6 N Y N 0 -5.709 3.289 -0.106
7 C26 C C7 N N N 0 -2.152 3.023 -2.539
8 C02 C C8 N N N 0 -4.244 2.08 -1.719
9 C03 C C9 N Y N 0 -5.466 2.158 -0.89
10 C04 C C10 N Y N 0 -6.38 1.107 -0.894
11 C05 C C11 N Y N 0 -7.53 1.189 -0.108
12 C06 C C12 N N N 0 -8.475 0.113 -0.105
13 C07 C C13 N N N 0 -9.25 -0.769 -0.102
14 C08 C C14 N Y N 0 -10.195 -1.845 -0.098
15 C09 C C15 N Y N 0 -11.347 -1.873 0.626
16 C11 C C16 N N N 0 -12.724 0.16 0.787
17 C19 C C20 N Y N 0 -11.482 -5.049 -1.081
18 C14 C C17 N Y N 0 -11.986 -3.153 0.32
19 C16 C C18 N Y N 0 -13.488 -5.01 0.244
20 C18 C C19 N Y N 0 -12.65 -5.648 -0.659
21 C23 C C21 N Y N 0 -6.849 3.364 0.669
22 C27 C C22 N N N 0 -1.33 4.3 -2.356
23 C29 C C23 N N N 0 -0.084 5.543 -0.729
24 C30 C C24 N N N 0 0.354 5.524 0.737
25 C32 C C25 N N N 0 1.701 4.308 2.302
26 C33 C C26 N N N 0 2.626 3.094 2.422
27 C35 C C27 N N N 0 4.786 2.369 1.56
28 C36 C C28 N Y N 0 5.996 2.589 0.739
29 C37 C C29 N Y N 0 6.144 3.773 0.013
30 C38 C C30 N Y N 0 7.273 3.982 -0.755
31 C39 C C31 N Y N 0 8.264 3.023 -0.811
32 C40 C C32 N Y N 0 8.13 1.832 -0.089
33 C41 C C33 N N N 0 9.159 0.837 -0.147
34 C42 C C34 N N N 0 10.002 0.022 -0.195
35 C43 C C35 N Y N 0 11.031 -0.972 -0.254
36 C44 C C36 N Y N 0 11.008 -2.163 0.404
37 C45 C C37 N N N 0 9.919 -2.675 1.312
38 C46 C C38 N N N 0 8.911 -3.448 0.502
39 C49 C C39 N Y N 0 12.253 -2.845 0.051
40 C50 C C40 N Y N 0 12.82 -4.074 0.394
41 C51 C C41 N Y N 0 14.039 -4.424 -0.116
42 C52 C C42 N N N 0 14.653 -5.75 0.252
43 C53 C C43 N Y N 0 14.714 -3.566 -0.972
44 C54 C C44 N Y N 0 14.171 -2.348 -1.323
45 C55 C C45 N Y N 0 12.934 -1.971 -0.817
46 C57 C C46 N Y N 0 6.994 1.618 0.692
47 N25 N N1 N N N 0 -3.363 3.1 -1.718
48 N34 N N2 N N N 0 3.824 3.312 1.608
49 O01 O O1 N N N 0 -4.034 1.097 -2.401
50 O12 O O2 N N N 0 -13.293 1.201 1.415
51 O13 O O3 N N N 0 -12.907 -0.005 -0.396
52 O21 O O4 N Y N 0 -10.079 -2.983 -0.813
53 O28 O O5 N N N 0 -0.867 4.381 -1.007
54 O31 O O6 N N N 0 1.231 4.417 0.957
55 O47 O O7 N N N 0 7.847 -4.001 1.105
56 O48 O O8 N N N 0 9.061 -3.57 -0.691
57 O56 O O9 N Y N 0 12.167 -0.873 -0.974
58 O58 O O10 N N N 0 4.659 1.338 2.191
59 H1 H H1 N N N 0 -12.446 -1.265 2.351
60 H2 H H2 N N N 0 -11.016 -0.267 1.992
61 H3 H H3 N N N 0 -13.822 -3.281 1.434
62 H4 H H4 N N N 0 -15.572 -5.409 0.02
63 H5 H H5 N N N 0 -14.623 -6.766 0.673
64 H6 H H6 N N N 0 -15.002 -5.367 1.706
65 H7 H H7 N N N 0 -8.647 2.391 1.285
66 H8 H H8 N N N 0 -5.003 4.106 -0.106
67 H9 H H9 N N N 0 -2.43 2.916 -3.587
68 H10 H H10 N N N 0 -1.558 2.162 -2.231
69 H11 H H11 N N N 0 -6.199 0.233 -1.502
70 H12 H H12 N N N 0 -12.916 -6.625 -1.036
71 H13 H H13 N N N 0 -10.836 -5.558 -1.782
72 H14 H H14 N N N 0 -7.031 4.241 1.274
73 H18 H H18 N N N 0 0.796 5.551 -1.372
74 H15 H H15 N N N 0 -0.475 4.282 -3.033
75 H16 H H16 N N N 0 -1.951 5.167 -2.58
76 H17 H H17 N N N 0 -0.68 6.436 -0.918
77 H19 H H19 N N N 0 0.875 6.453 0.972
78 H20 H H20 N N N 0 -0.522 5.427 1.377
79 H21 H H21 N N N 0 0.852 4.185 2.975
80 H22 H H22 N N N 0 2.25 5.21 2.57
81 H23 H H23 N N N 0 2.914 2.958 3.464
82 H24 H H24 N N N 0 2.104 2.204 2.07
83 H25 H H25 N N N 0 5.373 4.529 0.052
84 H26 H H26 N N N 0 7.381 4.899 -1.314
85 H27 H H27 N N N 0 9.142 3.19 -1.416
86 H28 H H28 N N N 0 10.355 -3.328 2.069
87 H29 H H29 N N N 0 9.426 -1.834 1.799
88 H30 H H30 N N N 0 12.298 -4.745 1.061
89 H31 H H31 N N N 0 14.337 -6.508 -0.464
90 H32 H H32 N N N 0 15.739 -5.665 0.236
91 H33 H H33 N N N 0 14.325 -6.036 1.252
92 H34 H H34 N N N 0 15.677 -3.855 -1.368
93 H35 H H35 N N N 0 14.705 -1.689 -1.99
94 H36 H H36 N N N 0 6.885 0.701 1.252
95 H37 H H37 N N N 0 -3.53 3.885 -1.173
96 H38 H H38 N N N 0 3.926 4.135 1.105
97 H39 H H39 N N N 0 -13.84 1.791 0.879
98 H40 H H40 N N N 0 7.227 -4.487 0.543