Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YDG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 22


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 3.034 0.798 -0.417
2 C01 C C2 N N N 0 -3.363 1.034 0.305
3 N02 N N1 N N N 0 -2.422 -0.049 0.009
4 C03 C C3 N N N 0 -2.924 -1.38 -0.344
5 C04 C C4 N N N 0 -1.095 0.178 0.062
6 O05 O O1 N N N 0 -0.679 1.279 0.355
7 C06 C C5 N N N 0 -0.127 -0.937 -0.242
8 N07 N N2 N Y N 0 1.245 -0.44 -0.116
9 C08 C C6 N Y N 0 2.214 -0.97 0.658
10 C09 C C7 N Y N 0 3.329 -0.221 0.495
11 N11 N N3 N Y N 0 1.785 0.668 -0.784
12 H101 H H1 N N N 0 3.717 1.562 -0.755
13 H012 H H2 N N N 0 -3.591 1.037 1.371
14 H011 H H3 N N N 0 -2.917 1.989 0.026
15 H013 H H4 N N N 0 -4.281 0.883 -0.262
16 H032 H H5 N N N 0 -3.055 -1.443 -1.424
17 H033 H H6 N N N 0 -2.21 -2.136 -0.019
18 H031 H H7 N N N 0 -3.882 -1.549 0.148
19 H061 H H8 N N N 0 -0.283 -1.755 0.461
20 H062 H H9 N N N 0 -0.293 -1.294 -1.258
21 H081 H H10 N N N 0 2.117 -1.836 1.296
22 H091 H H11 N N N 0 4.28 -0.381 0.983